Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03457 ATGGCGGAGTACGATCTGACACCGTGGATGGCTCCAAATCTCGACAGACATTTGGTATTCCCTCTCTTAGAGTTTCTCCAAGAGAGACAGTTATACGACGATAACCATATCCTTAAGGCTAAGATCAATCTCTTGAACAACACAAACATGGTTGATTACGCCATGGACATTCACAAGACGCTCTACCATACTGAAGATGTCCCTCAGGATATGGTCGAACGTAGGGCTGATGTTGTTGCTCGTCTCAAGTCTCTTGAAGATTCTGCCGCTCCTCTGGTTGCTTTCCTTCAGAATCATGCTGCTGTTCAGGAGTTGAGGGCTGATAAACACTACAATCTCCAGATGCTCAATGACAAATACCATATTGGTGCTGCACAAATAGAGGCATTATACCAATATGCCAAGTTTCAGTTTGAATGTGGAAGCTACTCTGGTGCTGCTGACTATCTTTATCAGTACAGAGCATTATGCACAAATAGTGAAAGGAGTTTGAATGCATTATGGGGAAAGCTGGCAGCTGAAGTATTGATGCAAAATTGGGATATTGCTCTTGAAGAGCTCAACCTCCTGAAGGAAATAATTGACTCAAAGAATTTTTCATCACCTATTAATCAGGTGCAAAGCAGAATATGGTTGATGCATTGGAGTCTGTTCATCTTTTTCAACCATGACAATGGAAGAACACAAATCATTGATTTGTTTAACCAGGACAAGTATCTTAACGCAATCCAAACTAGTGCTCCACACCTTTTGCGATACTTGGCCACAGCATTTATGGTCAATAAGCGCAGGAGGCCTCAATTCAGAGATTTTATAAAAGTTATTCTACAAGAGCAGAATTCATACAAGGACCCCATCACCGAGTTTCTGGCTTGTGTTTATGTCAACTATGACTTTGATGGCGCTCAAAAGAAGATGAGGGAGTGTGAAGAAGTAATTCTCAATGATCCCTTCCTTGTACAAAAACAAAAGCGCCGTATTTCTTGCAATGCCGATGACCCCGTTGGCTTTGCAAGTAATCTAGGTTTGAAGGATGAGCTTTCAATACAATTGAATAGGTATCATGAGAGCAGGAGCTATGATGCCAGTGCCTCTGAAGCTCCTAAGTCTACTAGAGCTGCTACTGTTATAAAGAAGTCAGAGTCAGAAGGGAAACCAGACTTGAATTGTGTTACAACTAGGACTGGGAAGCGATCTAGGCCATGTAGTTGGAAGAGGCGTAAATGCAAAAAGCAGAAGCAATCAACTGTTGAAGATGATGATCTAAATATTCAATGCAAGTTGCTTCCAAATAATACATATTGCATGCTTGCTAATCAACAGCATGGTAACACCAACTAA 1341 0.4139 MAEYDLTPWMAPNLDRHLVFPLLEFLQERQLYDDNHILKAKINLLNNTNMVDYAMDIHKTLYHTEDVPQDMVERRADVVARLKSLEDSAAPLVAFLQNHAAVQELRADKHYNLQMLNDKYHIGAAQIEALYQYAKFQFECGSYSGAADYLYQYRALCTNSERSLNALWGKLAAEVLMQNWDIALEELNLLKEIIDSKNFSSPINQVQSRIWLMHWSLFIFFNHDNGRTQIIDLFNQDKYLNAIQTSAPHLLRYLATAFMVNKRRRPQFRDFIKVILQEQNSYKDPITEFLACVYVNYDFDGAQKKMRECEEVILNDPFLVQKQKRRISCNADDPVGFASNLGLKDELSIQLNRYHESRSYDASASEAPKSTRAATVIKKSESEGKPDLNCVTTRTGKRSRPCSWKRRKCKKQKQSTVEDDDLNIQCKLLPNNTYCMLANQQHGNTN 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03457 446 Hamap Eukaryotic translation initiation factor 3 subunit E [EIF3E]. 2 366 IPR016650 GO:0003743|GO:0005737|GO:0005852
Vifa5g03457 446 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E 1 324 IPR016650 GO:0003743|GO:0005737|GO:0005852
Vifa5g03457 446 CDD eIF3E 3 320 IPR016650 GO:0003743|GO:0005737|GO:0005852
Vifa5g03457 446 MobiDBLite consensus disorder prediction 360 398 - -
Vifa5g03457 446 Pfam eIF3 subunit 6 N terminal domain 5 137 IPR019010 -
Vifa5g03457 446 SMART eIF3_N_2 5 137 IPR019010 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03457 Vifa-Chr5 1137380739 1137382188 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03457 4 322 Eukaryotic Initiation Factors Gene Family AT3G57290 82.759 0.0 565
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03457 K03250 - gmx:100788418 605.905