Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03456 ATGGCAGAGTACGATCTGACACTGTGGATTGCTCCAAATCTCGACAGACATTTGGTATTCCCTCTCTTAGAGTTTCTCCAAGAGAGACAGTTATACGACGATAACCATGTCCTTAAGGCTAAGATCAATCTCTTGAACAACACAAACATGGTTGATTACGCCATGGACATTCACAAGACGCTCTACCATACTGAAGATATCCCTCAGGATATGGTCGAACGTAGGGCTGATGTTGTTGCTCGTCTCAAGTCTCTTGAAGATGCCGCCGCTCCTCTGGTTGCTTTCCTTCAGAATCCTGCTGTTGTTCAGGAGTTGAGGGCTGATAAACACTACAATCTCCAGATGCTCAATGACAAATACCAGATTGGTGCTGCACAAATAGAGGCATTATACCAATATGCCAAGTTTCAGTTTGAATGTGGAAGCTACTCTGGTGCTGCTGACTATCTTTATCAGTACAGAGCATTATGCACAAATAGTGAAAGGAGTTTAAATGCATTGTGGGGAAAGCTGGCAGCTGAAGTATTGATGCAAAATTGGGATATTGCTCTTGAAGAGCTCAACCGCCTGAAGGAAATAATTGACTCAAAGAATTTTTCATCACCTATTAATCAGGTGCAAAGCAGAATATGGTTGATGCATTGGAGTCTGTTCATCTTTTTCAACCATGACAATGGAAGAACACAAATCATTGATTTGTTTAACCAGGACAAGTATCTTAACGCAATCCAAACTAGTGCTCCACACCTTTTGCGATACTTGGCCACAGCATTTATTGTCAATAAGCGCAGGAGGCCTCAATTCAAAGATTTTATAAAAGTTATTCAACAAGAGCAGAATTCATACAAGGACCCCATCACCGAGTTTTTGGCTTGTGTTTATGTCAACTATGACTTTGATGGCGCTCAAAAGAAGATGAGGGAGTGTGAAGAAGTAATTCTCAATGATCCCTTCCTTGTACAAAAACAAAAGCGCCGTATTTCTTGCAATGCCGATGACCCCGTTGGCTTTGCAAGTAATCTAGGTTTGACGGATGAGCTTTCAATGCAATTGAATAGGTATCATGAGAGCAGGAGCTATGATGCCAGTGCCTCTGAAGCTCCTAAGTCTACTAGAGCTGCTACTGTTATAAAGAAGTCAGAGTCAGAAGGGAAACCAGACTTGAATTGTGTTACAACTAGGACTGGGAAGCGATCTAGGCCATGTAGTTGGAAGAGGCGTAAATGCAAAAAGCAGAAGCAATCAACTGCTGAAGATGTTGATCTAAATATTCAATGCAAGTTCCTTCCAAATAATACAGATTGCATGCTTGCTAATCAACAGCATGGTAACACCAACTAA 1341 0.4154 MAEYDLTLWIAPNLDRHLVFPLLEFLQERQLYDDNHVLKAKINLLNNTNMVDYAMDIHKTLYHTEDIPQDMVERRADVVARLKSLEDAAAPLVAFLQNPAVVQELRADKHYNLQMLNDKYQIGAAQIEALYQYAKFQFECGSYSGAADYLYQYRALCTNSERSLNALWGKLAAEVLMQNWDIALEELNRLKEIIDSKNFSSPINQVQSRIWLMHWSLFIFFNHDNGRTQIIDLFNQDKYLNAIQTSAPHLLRYLATAFIVNKRRRPQFKDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMRECEEVILNDPFLVQKQKRRISCNADDPVGFASNLGLTDELSMQLNRYHESRSYDASASEAPKSTRAATVIKKSESEGKPDLNCVTTRTGKRSRPCSWKRRKCKKQKQSTAEDVDLNIQCKFLPNNTDCMLANQQHGNTN 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03456 446 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E 1 324 IPR016650 GO:0003743|GO:0005737|GO:0005852
Vifa5g03456 446 SMART eIF3_N_2 5 137 IPR019010 -
Vifa5g03456 446 CDD eIF3E 3 320 IPR016650 GO:0003743|GO:0005737|GO:0005852
Vifa5g03456 446 Hamap Eukaryotic translation initiation factor 3 subunit E [EIF3E]. 2 366 IPR016650 GO:0003743|GO:0005737|GO:0005852
Vifa5g03456 446 MobiDBLite consensus disorder prediction 359 398 - -
Vifa5g03456 446 Pfam eIF3 subunit 6 N terminal domain 5 137 IPR019010 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03456 Vifa-Chr5 1137364617 1137366066 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03456 4 322 Eukaryotic Initiation Factors Gene Family AT3G57290 84.326 0.0 575
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03456 K03250 - gmx:100788418 608.601