Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03451 ATGGAGCTCTGGAACGGCGATTTATCGGAGCTGGAGGTTGGGAGTTCCGTCGAGTCGTTCCAGAGGTTTTTGGTTTCTCAGAGAGAACTTTTGCATAGTCAGATCGATCAGTTTCAGGAAATTGTTGTGACGCAATGTAAACTCACTGGCGTCAATCCTCTCTCTCAAGAAATGGCTGCTGGTGCTCTGTCAATAAAAATTGGAAAAAGACCTAGGGATTTGTTAAATCCGAAGGCTGTAAATTACATGCAATCAGTTTTTTCTATTAAAGATGCAATTAGTAAGAAAGAATCTCGGGAGATCAGTGCTTTATTTGGTGTAACAGTAACACAGGTGCGCGATTTTTTCACTAGTCAACGTTCAAGAGTGAGAAAACTAGTTCAGTTGTCAAAGGAGAGGGCATTAAAATCTAATTCTTGTGCCGAATCTCTTGATGTGCAAATGAACTCTGATCCAGTGAGATCAATAAACCCAGCTCCCTTAAACTCAGATGGTGCCACCAACGTGGAAGAAGCATCCTGTTCTACACAGGAAGCAGCTCTTTCTGACCTGGACGACTTAGATAAACAATTTGTTGAGAACATTTTTGGACTAATGCAGAAAGAGGAAACATTTTGTGGACAGGAGAAGTTAATGGAGTGGATATTGTCAATACAGAACTTTTCCGTCTTGTTATGGTTTTTGACCGCAGGAGGTGCAATAACTTTAGCCAATTGGTTGACTAAAGCTGCTGTTGAAGAGCAAACTAGTGTACTGCTGCTTATCTTGAAGGTTCTTTGTCATTTGCCTTTACATAAAGCTCTTCCTGCACACATATCAGCTTTATTGCAGAGTGTTAATAGACTACGGTTCTACAGAACATCAGACATATCTAACAGGGCAAGGGTTTTGTTATCTAAGTGGAGCAAATTGTTAACAAGGAACCAATCCATACAGAAACCTAATGGTGTTAAGCCTTCTTATGATGGTCAAAAAGAGAGAATACTTTCTCAAAGTATTGGTCAAATAATCGGCCCTGAATCATGGCATTTTGAAGTTCCTGAAGATATTCTTGCTCTCTCGAATGAATTTTCAGATGATTTCAGGAAACTGGGATCTCAATCTGTGAAATTGTTGCTGCCCAGCTCAGATGATTGTAATAAGAAACCTCCCCTTGGTGTATCTTCATGTCAATCTAGAGAGCGCAGAAAAGTACAATTGGTGGAACAGCCAGGATCAATAAGTAGAAGTCCACAGACGGCAAGGTCAGGGCCAGTAAGTCAAGGCCGTCCTATGTCCGCCGATGATATCCAGAAAGCAAAAATGCGTGCGTTATTTATGCAGATTTGCTCTTCTAAAGTTCCAGCGCCACTCAAAATTGAAGTAGAGAAGAAGCCTTTGTTGTTTTCTTCTAAAACCACTAATAGGCTGGAAGCTTCTTATTCTAAACTGAAAACGGATTTGAAGGAAACTCTCTCGGAGAAGTGCAAGAGGGTGAAAATCTTCTGGAAAACACCAGCAGAAATAAAACTTAAAGATACATGGAGAGTTGGTGCTGGTCAAAATAGTAAAGAGGTTCATATCCAGGAAAACAGAAACCGCAGGGACAAAGAAGCTATTTATCAGACAGCACAAGAGATGCCCTCTAACCCCAAGGAACCTTGGGATATCGAAATGGACTATGACGACTCTTTGACTCTGGAAATTCCTATTGAACAACTACCAGATAATGATGATCCAGAAATAGTAGAAGCATCCAATGAAGTTGCAACTGAAACTCACGCTGCTGTTCAAGGGGTGGCCTCCTCATCTTCAGCCAGTAATGCAGCCACTGCTGAACCTGATTTAGAGTTGCTGGCCGTACTGCTAAAAAATCCAGACTTGGTATTTGCCTTAACTTCTGGACAAATTGGCAACATCTCAAATGAGGAAACCTTGAAGCTGCTTGACATGATCAAGAGAGGCAGCGTGAACACAGGGTTAAGTGAAAATGCAAATAGAAACTATGGTACTAGTGCAATGGCCCCTGAGAAGGTGGAAGTTTCTCTCCCATCTCCAACCCCTTCAAGCAATCCAAGCACGAGTGGATGCAGCATAGAAGCACCAAAGAATCCATTTACAAGGCAAAACTTAGCACCTGATAGACGTTTCCAGAGCTCTTCTACAATTGCTACTGCCAACTTATCATCTCAGACTTCAGCAACTAGTACTACAGTAAGGCAGCAGCATACATTTGTTCCGTTTTCTAAGCAGCTCCCTGGCACAACAATTTCTCCATATTCAATACCTCAGGCAAATAATAATACTATTCATGAAAAACAACCACTTCACTCTCTTTCCTCAGTCTATGCACAAGCACCATTCTCTGATAGAGGTTTAGCTATGAAGAACACAATCACCGCCGATGTATCTCTAGTCGGCGCACATACACATGCAACGCGGGCTGATGGAATAAGTAACATAAAACCAGTAGTACCTAATTCTACTATGCAAGAGGGTTTGTCTAATTCATTCCCACAATCCTTCACGTTGAACTCACCAACAACATCACGCTCAGCCACACAACAACAAAGAAATACGTATATGATGCCCCACCAGCCCCATTTTCCTGAACCATCTTATCATAACCCTGTCCGTCCCTATCAACCACAGTTCGAAAAACCAGTTCCTGCATCAGATTACCGGAGAGTTAGGCAGGATATGCCACCGAGTCATCATTCTCAACGAAATCATGACAACTATAACACATTGGTTGGGGGATCCATGCCATCTGGTTCTTGGGATAGAAACAATCATGAAAGAGGGGGATTTGAAACATGGAGTCCGGATAATAGTCCAACTAGGAATCCTAGGTATGTTCCAGGTAGGAATCTCCCAGATTCCAGAACGAATCATGTAAGAAATAATAGACCTGAATGGTCAAGGCAGCGGGGTTCTTCTGGACATTGGAACCCTGGTAGGCATGAGAACAGAAAGTGGAATGATCAGAGACGATAA 2976 0.4214 MELWNGDLSELEVGSSVESFQRFLVSQRELLHSQIDQFQEIVVTQCKLTGVNPLSQEMAAGALSIKIGKRPRDLLNPKAVNYMQSVFSIKDAISKKESREISALFGVTVTQVRDFFTSQRSRVRKLVQLSKERALKSNSCAESLDVQMNSDPVRSINPAPLNSDGATNVEEASCSTQEAALSDLDDLDKQFVENIFGLMQKEETFCGQEKLMEWILSIQNFSVLLWFLTAGGAITLANWLTKAAVEEQTSVLLLILKVLCHLPLHKALPAHISALLQSVNRLRFYRTSDISNRARVLLSKWSKLLTRNQSIQKPNGVKPSYDGQKERILSQSIGQIIGPESWHFEVPEDILALSNEFSDDFRKLGSQSVKLLLPSSDDCNKKPPLGVSSCQSRERRKVQLVEQPGSISRSPQTARSGPVSQGRPMSADDIQKAKMRALFMQICSSKVPAPLKIEVEKKPLLFSSKTTNRLEASYSKLKTDLKETLSEKCKRVKIFWKTPAEIKLKDTWRVGAGQNSKEVHIQENRNRRDKEAIYQTAQEMPSNPKEPWDIEMDYDDSLTLEIPIEQLPDNDDPEIVEASNEVATETHAAVQGVASSSSASNAATAEPDLELLAVLLKNPDLVFALTSGQIGNISNEETLKLLDMIKRGSVNTGLSENANRNYGTSAMAPEKVEVSLPSPTPSSNPSTSGCSIEAPKNPFTRQNLAPDRRFQSSSTIATANLSSQTSATSTTVRQQHTFVPFSKQLPGTTISPYSIPQANNNTIHEKQPLHSLSSVYAQAPFSDRGLAMKNTITADVSLVGAHTHATRADGISNIKPVVPNSTMQEGLSNSFPQSFTLNSPTTSRSATQQQRNTYMMPHQPHFPEPSYHNPVRPYQPQFEKPVPASDYRRVRQDMPPSHHSQRNHDNYNTLVGGSMPSGSWDRNNHERGGFETWSPDNSPTRNPRYVPGRNLPDSRTNHVRNNRPEWSRQRGSSGHWNPGRHENRKWNDQRR 991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03451 991 MobiDBLite consensus disorder prediction 889 991 - -
Vifa5g03451 991 MobiDBLite consensus disorder prediction 930 944 - -
Vifa5g03451 991 MobiDBLite consensus disorder prediction 382 427 - -
Vifa5g03451 991 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 225 314 IPR035441 -
Vifa5g03451 991 SMART HOX_1 68 130 IPR001356 GO:0003677
Vifa5g03451 991 MobiDBLite consensus disorder prediction 676 703 - -
Vifa5g03451 991 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 106 975 - -
Vifa5g03451 991 SUPERFAMILY Homeodomain-like 69 130 IPR009057 -
Vifa5g03451 991 ProSiteProfiles 'Homeobox' domain profile. 66 126 IPR001356 GO:0003677
Vifa5g03451 991 MobiDBLite consensus disorder prediction 901 921 - -
Vifa5g03451 991 MobiDBLite consensus disorder prediction 975 991 - -
Vifa5g03451 991 Gene3D - 68 125 - -
Vifa5g03451 991 MobiDBLite consensus disorder prediction 672 703 - -
Vifa5g03451 991 MobiDBLite consensus disorder prediction 403 420 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03451 483 703 Homeobox Transcription Factor Family AT4G02560 49.321 5.19e-49 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03451 - - gmx:100806633 1301.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03451 5 1134902993 1134914198 Vifa5g03451 5 1134902993 1134914198 ECH