Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03431 ATGGTCTTCTTTTTCTCGATAATCCAATTGGAACTGGCTTCAGTGTATCCTAAACCCCACAAGAGATTCCAACCGATCAAAACGGAGTGTCAAAACACCTCCGCTGCCAGGAAGGATGACAAAGCCGTCAACGCCGCTCACCGTTCCGGCGCCGATATCGAAACCATGAAGAAACATAATGCTGCGACGAACAAAGCTGCGTCTAGCAGCACTTCGTTGAACACTAAGAGGCTGGATGAGGATACAGAGAATTTAGCTCATGATCGGGTCCCAACTGAACTCAAGAAAGCTATAATGCAAGCCCGGACAGACAAGAAACTTACTCAGGTGCAACTTGCCCAAATTATCAATGAGAAGCCTCAAGTGAACCAGGAGTATGAATCAGGAAAAGCCATTCCAAATCAGCAGATAATTGGCAAGTTGGAGAGAGCACTTGGTGCCAAACTGCGTGGGAAAAAATGA 462 0.4654 MVFFFSIIQLELASVYPKPHKRFQPIKTECQNTSAARKDDKAVNAAHRSGADIETMKKHNAATNKAASSSTSLNTKRLDEDTENLAHDRVPTELKKAIMQARTDKKLTQVQLAQIINEKPQVNQEYESGKAIPNQQIIGKLERALGAKLRGKK 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03431 153 Gene3D - 82 153 IPR010982 GO:0003677
Vifa5g03431 153 ProSiteProfiles Cro/C1-type HTH domain profile. 98 152 IPR001387 -
Vifa5g03431 153 MobiDBLite consensus disorder prediction 61 75 - -
Vifa5g03431 153 FunFam Multiprotein bridging factor 1 82 153 - -
Vifa5g03431 153 SUPERFAMILY lambda repressor-like DNA-binding domains 91 149 IPR010982 GO:0003677
Vifa5g03431 153 SMART mbf_short4 97 152 IPR001387 -
Vifa5g03431 153 MobiDBLite consensus disorder prediction 58 88 - -
Vifa5g03431 153 Pfam Multiprotein bridging factor 1 31 90 IPR013729 -
Vifa5g03431 153 Pfam Helix-turn-helix 98 148 IPR001387 -
Vifa5g03431 153 CDD HTH_XRE 96 146 IPR001387 -
Vifa5g03431 153 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 31 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03431 Vifa-Chr5 1127628933 1127629394 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Vifa5g03431 MBF1 5.1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03431 K03627 - gmx:100500420 189.119