Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03430 ATGGTCTTCTTTTTCTCGATAATCCAATTGGAACTGGCTTCAGTGTATCCTAAACCCCACAAGAGATTCCAACCGATCAAAACGAAGTGTCAAAACACCTCCGCTGCCAGGAAGGATGACAAAGCCGTCAACACCGCTCGCCGTTCCGGCGCCGATATCGAAACCTTGAAGAAACATAATGCTGCGACGAACAAAGCTGCATCTAGCAGCACTTCGTTGAACACTAAGAGGCTGGATGAGGATACAGAGAATTTAGCTCATGATCGGGTCCCAACTGAACTCAAGAAAGCTATAATGCAAGCCCGGAAGGACAAGAAACTTACTCAGGCGCAACTTGCCCAAATTATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAATCAGGAAAAGCCATTCCAAATCAGCAGATAATTGGCAAGTTGGAGAGAGCCCTTGGTGCCAAACTGCGTGGGAAAAAGTGA 462 0.4675 MVFFFSIIQLELASVYPKPHKRFQPIKTKCQNTSAARKDDKAVNTARRSGADIETLKKHNAATNKAASSSTSLNTKRLDEDTENLAHDRVPTELKKAIMQARKDKKLTQAQLAQIINEKPQVIQEYESGKAIPNQQIIGKLERALGAKLRGKK 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03430 153 Pfam Helix-turn-helix 98 148 IPR001387 -
Vifa5g03430 153 Gene3D - 82 153 IPR010982 GO:0003677
Vifa5g03430 153 SUPERFAMILY lambda repressor-like DNA-binding domains 91 149 IPR010982 GO:0003677
Vifa5g03430 153 MobiDBLite consensus disorder prediction 61 75 - -
Vifa5g03430 153 FunFam Multiprotein bridging factor 1 82 153 - -
Vifa5g03430 153 ProSiteProfiles Cro/C1-type HTH domain profile. 98 152 IPR001387 -
Vifa5g03430 153 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 29 153 - -
Vifa5g03430 153 Pfam Multiprotein bridging factor 1 27 90 IPR013729 -
Vifa5g03430 153 Coils Coil 98 118 - -
Vifa5g03430 153 MobiDBLite consensus disorder prediction 55 84 - -
Vifa5g03430 153 SMART mbf_short4 97 152 IPR001387 -
Vifa5g03430 153 CDD HTH_XRE 96 146 IPR001387 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03430 Vifa-Chr5 1127618806 1127619267 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Vifa5g03430 MBF1 1.8e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03430 K03627 - rvl:131331516 193.741