Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03428 ATGGCTGATTCTCCCAAAAACCCCAACCCTTCACACAAACCAAAACGACCCTGCGATTATTGCAGCAATTCAACCGCAGTTCTCTACTGCAGAGCTGACTCTGCCAAACTCTGTTTCTCCTGCGACCGTGAAGTCCACTCAACAAACCAGCTTTTCTCAAAGCACACACGCTCCTTAATCTGTGACTCCTGCGATGATTCACCTGCTACTATACTCTGTTCAACGGAATCCTCTGTTTTCTGTCAGAATTGTGATTGGGAAAAGCATAATCTCTCGCTTTCTTCTCCGCATGAAAGAAGGCCTCTTGAGGGCTTCACTGGGTGTCCTTCGGTTAGTGAACTGTTGACGATTGTTGGGTTGCAGGAAATCGGGAAAAAATCGTTGCTTTTGGATCAGGAAGCTTTTGGAGATGGGTTTTTAGGGTATGAGATTGAAGGGGTTTCTGATTTGTTTGTTTGGGATGCTCCCACTTTTGTTAGTCTTGATGATCTTATTTCTTCTTCTCCTTCTTCTCATAATTATACTGCTATGGAGGTTCCTCTTTTGCCTAAGAATCGTAAGGCTGCTTGTGGAAGACAGAAAGAAGAGATTTTAAGTCAGCTTCGCGAGATGACAAAGTCTGAGCCTTTGGATTATGAAGATTATATGCCACCGAGGAATTTATCTACAGATTTTGAACACGACACTAAGGCTGATATCGTTCCTTCGAATGAGTGGCTCAGAGAAAGCAGCGAACCTATGTATCAAGTTGTATCGGTTGATACGTCAATCAGATCTCATACCGAAGAAATTCCAGTTAAACATTCTGTATCTTCTGTCGGGGAGCCTCATACCCACATGACGACACCTTCAGAATCTCTTAAGTCTGAAACCTTTTCAACTACTACACCTAAAGCTCTTCCTCCTCCATATGAATTAGCGAGTCAAGAAAGGGATTCTGCATTGTTGCGGTACAAGCAGAAGAAGAAAACAAGAAGATACGACAAGCATATAAGGTATGAATCCCGAAAAGTTCGGGCGGAGACGCGAACACGAGTTAAGGGCCGATTTGCCAAGGTAGAGCAGTGA 1068 0.4373 MADSPKNPNPSHKPKRPCDYCSNSTAVLYCRADSAKLCFSCDREVHSTNQLFSKHTRSLICDSCDDSPATILCSTESSVFCQNCDWEKHNLSLSSPHERRPLEGFTGCPSVSELLTIVGLQEIGKKSLLLDQEAFGDGFLGYEIEGVSDLFVWDAPTFVSLDDLISSSPSSHNYTAMEVPLLPKNRKAACGRQKEEILSQLREMTKSEPLDYEDYMPPRNLSTDFEHDTKADIVPSNEWLRESSEPMYQVVSVDTSIRSHTEEIPVKHSVSSVGEPHTHMTTPSESLKSETFSTTTPKALPPPYELASQERDSALLRYKQKKKTRRYDKHIRYESRKVRAETRTRVKGRFAKVEQ 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03428 355 MobiDBLite consensus disorder prediction 267 312 - -
Vifa5g03428 355 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 17 353 - -
Vifa5g03428 355 SMART bboxneu5 13 60 IPR000315 GO:0008270
Vifa5g03428 355 SMART bboxneu5 61 102 IPR000315 GO:0008270
Vifa5g03428 355 CDD Bbox1_BBX-like 17 60 - -
Vifa5g03428 355 ProSiteProfiles Zinc finger B-box type profile. 56 102 IPR000315 GO:0008270
Vifa5g03428 355 MobiDBLite consensus disorder prediction 274 298 - -
Vifa5g03428 355 CDD Bbox1_BBX-like 60 102 - -
Vifa5g03428 355 Pfam CCT motif 311 353 IPR010402 GO:0005515
Vifa5g03428 355 Pfam B-box zinc finger 14 58 IPR000315 GO:0008270
Vifa5g03428 355 Pfam B-box zinc finger 59 102 IPR000315 GO:0008270
Vifa5g03428 355 ProSiteProfiles Zinc finger B-box type profile. 13 60 IPR000315 GO:0008270
Vifa5g03428 355 ProSiteProfiles CCT domain profile. 311 353 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03428 Vifa-Chr5 1127131493 1127133102 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03428 11 326 C2C2-CO-like Transcription Factor Family AT2G47890 41.176 7.74e-74 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Vifa5g03428 zf-B_box 4.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03428 - - cam:101499146 556.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03428 5 1127131493 1127133102 Vifa5g03428 5 1127131493 1127133102 ECH