Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03416 ATGGCGGAAACGAAGGAAGAGAGTAAATCTAACGAAGAGAGTGTGAAACTATTCGTAGGTCAAGTACCGAAGCACATGACGGAAGATGAGTTACTCACAATGTTCAAAGAGTTTGCTTTGGTTGAAGAAGTCAACATCATCAAAGACAAAGCTACTCGCGCTTCTCGAGGTTGTTGCTTTGTGATTTGTCCGTCTAGAGATGAAGCTGATAAGGCCGTTAATGCGTGTCACAATAAGAAGACGTTACCCGGGGCATCTAGTCCTTTGCAAGTGAAGTATGCTGATGGCGAGTTGGAAAGATTAGAGCACAAACTTTTCATTGGCATGCTTCCAAAGAATGTTTCTGAAGTTGAAGTATCTGAACTTTTTTCCCAGTATGGAACTATAAAGGATTTACAGCTTTTAAGAGGTTCTCAACAGACAAGTAAAGGTTGTGCATTTTTGAAATATGAAACTAAAGAACAAGCTCTTGCTGCTTTGGAAGCAATCAATGGAAAACACAAAATGGAGTATTTTGGACCTTCAAGCGGCATCCAGCCACAAAATCCTGTTGGTGAGCGATGTGAACATTTAATCATGTTCAGATTTCATTATAGACCTGCAATTGTTGTTTCAGTTTTGCTCGAACTGGATCTAAGCTTGGGAAAGGGAAAATCAAGCTTTGGCTTGTTAAGCTTATTACATGGTTCAAGTGTTCCTTTAGTTGTCAAATGGGCTGATACTGAAAAGGAAAGACAAGCCCGAAGAGCTCAGAAAGCACAATCTCAAGCTTCTAATGTGGGACATGCTGATTCTCAGCATCCTTCGTTGTTTGGAGCCATGCCTATGGGCTATGTACCCCCATATAACGGTTATGGTTATCAGGCTCCAGCAAATTATGGGCTTATGCCGTACCGCATGCCGCCAATGCAGAATCAAGCTGGTTACCACAATATGATGCCTCACATGAATCAAGGAAATGCTTTGCGGCCCGATCTTGGCCCCAATATGAATCCTAGAAACTATCACGTACCTCCTGCAGGTTATGTTGGTTCTTATCCTGCTGTGCCAGGTATACAACATCCAATGCCCTATCCTGCAGGAATGATTAGTCCAAGGCCTATGAATAGTCCTCCTGGTTCTGTTTCACCTTCCGGTGGAAATGGTAACTCTGCAACATCTTCAGGGTCCAGCAAAAATTCAGGCGGGGGTCAGATTGAAGGACCCCCTGGCGCAAATCTATTTATCTACCACATACCTCCAGAATTCGGAGATCAAGAGCTTGCTAATGCTTTTCAACCTTTCGGTAGAGTTTTAAGTGCTAAAGTTTTTGTTGACAAAGCAACCGGTGTCAGCAAATGTTTCGGGTTTGTAAGTTATGATTCCCCAGATCATGCTCAATCTGCAATAAGTATGATGAATGGATGCCAATTAGGAGGTAAGAAATTAAAGGTTCAGCATAAGAGGGACAACAAACCTGGTAAATATTGA 1470 0.4238 MAETKEESKSNEESVKLFVGQVPKHMTEDELLTMFKEFALVEEVNIIKDKATRASRGCCFVICPSRDEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEVEVSELFSQYGTIKDLQLLRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEYFGPSSGIQPQNPVGERCEHLIMFRFHYRPAIVVSVLLELDLSLGKGKSSFGLLSLLHGSSVPLVVKWADTEKERQARRAQKAQSQASNVGHADSQHPSLFGAMPMGYVPPYNGYGYQAPANYGLMPYRMPPMQNQAGYHNMMPHMNQGNALRPDLGPNMNPRNYHVPPAGYVGSYPAVPGIQHPMPYPAGMISPRPMNSPPGSVSPSGGNGNSATSSGSSKNSGGGQIEGPPGANLFIYHIPPEFGDQELANAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPDHAQSAISMMNGCQLGGKKLKVQHKRDNKPGKY 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03416 489 CDD RRM3_CELF1-6 407 479 - -
Vifa5g03416 489 SUPERFAMILY RNA-binding domain, RBD 103 484 IPR035979 GO:0003676
Vifa5g03416 489 FunFam RNA-binding protein BRN1 371 482 - -
Vifa5g03416 489 MobiDBLite consensus disorder prediction 245 266 - -
Vifa5g03416 489 MobiDBLite consensus disorder prediction 373 397 - -
Vifa5g03416 489 SUPERFAMILY RNA-binding domain, RBD 9 98 IPR035979 GO:0003676
Vifa5g03416 489 CDD RRM1_2_CELF1-6_like 16 92 - -
Vifa5g03416 489 Gene3D - 376 482 IPR012677 -
Vifa5g03416 489 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 166 IPR000504 GO:0003723
Vifa5g03416 489 PANTHER RNA BINDING PROTEIN 14 482 - -
Vifa5g03416 489 Gene3D - 102 179 IPR012677 -
Vifa5g03416 489 SMART rrm1_1 104 172 IPR000504 GO:0003723
Vifa5g03416 489 SMART rrm1_1 16 92 IPR000504 GO:0003723
Vifa5g03416 489 SMART rrm1_1 406 479 IPR000504 GO:0003723
Vifa5g03416 489 Gene3D - 2 101 IPR012677 -
Vifa5g03416 489 PRINTS Paraneoplastic encephalomyelitis antigen family signature 108 123 IPR002343 GO:0003723|GO:1990904
Vifa5g03416 489 PRINTS Paraneoplastic encephalomyelitis antigen family signature 15 30 IPR002343 GO:0003723|GO:1990904
Vifa5g03416 489 PRINTS Paraneoplastic encephalomyelitis antigen family signature 123 135 IPR002343 GO:0003723|GO:1990904
Vifa5g03416 489 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 405 483 IPR000504 GO:0003723
Vifa5g03416 489 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 81 IPR000504 GO:0003723
Vifa5g03416 489 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 166 IPR000504 GO:0003723
Vifa5g03416 489 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 407 477 IPR000504 GO:0003723
Vifa5g03416 489 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 96 IPR000504 GO:0003723
Vifa5g03416 489 MobiDBLite consensus disorder prediction 251 265 - -
Vifa5g03416 489 MobiDBLite consensus disorder prediction 360 402 - -
Vifa5g03416 489 FunFam RNA-binding protein BRN1 2 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03416 Vifa-Chr5 1121921334 1121927129 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03416 405 478 Eukaryotic Initiation Factors Gene Family AT2G23350 32.432 4.68e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03416 K13207 - gmx:100813239 443.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03416 5 1121921334 1121927129 Vifa5g03416 5 1121921334 1121927129 ECH