Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03415 ATGGCGGAAACGAAGGAAGAGAGTAAATCTAACGAAGAGAGTGTGAAACTATTCGTAGGTCAAGTACCGAAGCACATGACGGAAGATGAGTTACTCACAATGTTCAAAGAGTTTGCTTTGGTTGAAGAAGTCAACATCATCAAAGACAAAGCTACTCGCGCTTCTCGAGGTTGTTGCTTTGTGATTTGTCCGTCTAGAGATGAAGCTGATAAGGCCGTTAATGCGTGTCACAATAAGAAGACGTTACCCGGGGCATCTAGTCCTTTGCAAGTGAAGTATGCTGATGGCGAGTTGGAAAGATTAGAGCACAAACTTTTCATTGGCATGCTTCCAAAGAATGTTTCTGAAGTTGAAGTATCTGAACTTTTTTCCCAGTATGGAACTATAAAGGATTTACAGCTTTTAAGAGGTTCTCAACAGACAAGTAAAGTAGGTTGTGCATTTTTGAAATATGAAACTAAAGAACAAGCTCTTGCTGCTTTGGAAGCAATCAATGGAAAACACAAAATGGAGGGTTCAAGTGTTCCTTTAGTTGTCAAATGGGCTGATACTGAAAAGGAAAGACAAGCCCGAAGAGCTCAGAAAGCACAATCTCAAGCTTCTAATGTGGGACATGCTGATTCTCAGCATCCTTCGTTGTTTGGAGCCATGCCTATGGGCTATGTACCCCCATATAACGGTTATGGTTATCAGGCTCCAGCAAATTATGGGCTTATGCCGTACCGCATGCCGCCAATGCAGAATCAAGCTGGTTACCACAATATGATGCCTCACATGAATCAAGGAAATGCTTTGCGGCCCGATCTTGGCCCCAATATGAATCCTAGAAACTATCACGTACCTCCTGCAGGTTATGTTGGTTCTTATCCTGCTGTGCCAGGTATACAACATCCAATGCCCTATCCTGCAGGAATGATTAGTCCAAGGCCTATGAATAGTCCTCCTGGTTCTGTTTCACCTTCCGGTGGAAATGGTAACTCTGCAACATCTTCAGGGTCCAGCAAAAATTCAGGCGGGGGTCAGATTGAAGGACCCCCTGGCGCAAATCTATTTATCTACCACATACCTCCAGAATTCGGAGATCAAGAGCTTGCTAATGCTTTTCAACCTTTCGGTAGAGTTTTAAGTGCTAAAGTTTTTGTTGACAAAGCAACCGGTGTCAGCAAATGTTTCGGGTTTGTAAGTTATGATTCCCCAGATCATGCTCAATCTGCAATAAGTATGATGAATGGATGCCAATTAGGAGGTAAGAAATTAAAGGTTCAGCATAAGAGGGACAACAAACCTGGTAAATATTGA 1299 0.428 MAETKEESKSNEESVKLFVGQVPKHMTEDELLTMFKEFALVEEVNIIKDKATRASRGCCFVICPSRDEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEVEVSELFSQYGTIKDLQLLRGSQQTSKVGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQASNVGHADSQHPSLFGAMPMGYVPPYNGYGYQAPANYGLMPYRMPPMQNQAGYHNMMPHMNQGNALRPDLGPNMNPRNYHVPPAGYVGSYPAVPGIQHPMPYPAGMISPRPMNSPPGSVSPSGGNGNSATSSGSSKNSGGGQIEGPPGANLFIYHIPPEFGDQELANAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPDHAQSAISMMNGCQLGGKKLKVQHKRDNKPGKY 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03415 432 SUPERFAMILY RNA-binding domain, RBD 9 97 IPR035979 GO:0003676
Vifa5g03415 432 MobiDBLite consensus disorder prediction 194 208 - -
Vifa5g03415 432 FunFam RNA-binding protein BRN1 isoform X1 100 193 - -
Vifa5g03415 432 MobiDBLite consensus disorder prediction 316 340 - -
Vifa5g03415 432 Gene3D - 319 425 IPR012677 -
Vifa5g03415 432 SMART rrm1_1 104 180 IPR000504 GO:0003723
Vifa5g03415 432 SMART rrm1_1 16 92 IPR000504 GO:0003723
Vifa5g03415 432 SMART rrm1_1 349 422 IPR000504 GO:0003723
Vifa5g03415 432 PANTHER RNA BINDING PROTEIN 14 425 - -
Vifa5g03415 432 SUPERFAMILY RNA-binding domain, RBD 103 427 IPR035979 GO:0003676
Vifa5g03415 432 CDD RRM3_CELF1-6 350 422 - -
Vifa5g03415 432 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 81 IPR000504 GO:0003723
Vifa5g03415 432 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 169 IPR000504 GO:0003723
Vifa5g03415 432 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 350 420 IPR000504 GO:0003723
Vifa5g03415 432 CDD RRM1_2_CELF1-6_like 16 92 - -
Vifa5g03415 432 PRINTS Paraneoplastic encephalomyelitis antigen family signature 123 135 IPR002343 GO:0003723|GO:1990904
Vifa5g03415 432 PRINTS Paraneoplastic encephalomyelitis antigen family signature 165 182 IPR002343 GO:0003723|GO:1990904
Vifa5g03415 432 PRINTS Paraneoplastic encephalomyelitis antigen family signature 108 123 IPR002343 GO:0003723|GO:1990904
Vifa5g03415 432 PRINTS Paraneoplastic encephalomyelitis antigen family signature 15 30 IPR002343 GO:0003723|GO:1990904
Vifa5g03415 432 Gene3D - 2 98 IPR012677 -
Vifa5g03415 432 Gene3D - 99 194 IPR012677 -
Vifa5g03415 432 MobiDBLite consensus disorder prediction 303 345 - -
Vifa5g03415 432 FunFam RNA-binding protein BRN1 2 99 - -
Vifa5g03415 432 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 184 IPR000504 GO:0003723
Vifa5g03415 432 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 348 426 IPR000504 GO:0003723
Vifa5g03415 432 FunFam RNA-binding protein BRN1 314 425 - -
Vifa5g03415 432 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 96 IPR000504 GO:0003723
Vifa5g03415 432 MobiDBLite consensus disorder prediction 186 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03415 Vifa-Chr5 1121921334 1121927129 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03415 348 421 Eukaryotic Initiation Factors Gene Family AT2G23350 32.432 5.05e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03415 K13207 - gmx:100813239 745.732