Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03399 ATGGGTGCCAATTCGAATCTAGCCGAATCCACTCACGATCTCAACGAGCAGATCTCTCAGCTCATGCAGTGCAAACCACTTTCCGAACAACAGGTTAAAGAATTATGTGAGAAGGCTAAGGAGATTTTAATGGATGAAAGTAATGTCCAGCCTGTGAAAAGCCCGGTGACAATTTGTGGCGATATTCATGGGCAGTTTCATGATCTTGCTGAACTATTTCGAATTGGAGGGAAGTGTCCAGATACCAACTACTTGTTTATGGGCGATTATGTGGACCGGGGTTATTATTCAGTTGAGACTGTAACACTTCTCGTGGCACTCAAAGTGCGGTATCCTCAGCGGATTACTATTCTTAGAGGAAACCATGAAAGCCGTCAGATTACTCAAGTATATGGATTTTACGATGAGTGCCTAAGAAAGTATGGGAGTGCTAATGTCTGGAAGATCTTTACAGACCTCTTCGATTTTTTCCCGTTGACTGCATTGGTTGAATCAGAAATATTTTGTTTGCATGGTGGACTGTCACCGTCAATTGAGACCCTTGATAACATAAGAAACTTTGACCGTGTTCAAGAGGTTCCTCATGAAGGGCCTATGTGTGATCTACTATGGTCTGACCCAGATGACAGATGTGGTTGGGGAATTTCTCCTCGTGGGGCTGGATACACCTTTGGCCAGGATATATCTGAACAGTTCAATCACACGAACAGCCTTAAATTAATTGCTAGAGCTCACCAGCTTGTTATGGATGGATTTAACTGGGCTCATGAACAAAAGGTGGTTACCATTTTCAGTGCTCCTAATTACTGTTACCGATGTGGCAACATGGCTTCCATATTGGAGGTTGATGATTGCAAGGGCCACACATTTATCCAGTTTGAACCTGCTCCAAGGAGAGGAGAACCTGATGTCACTCGAAGAACGCCTGATTACTTCTTGTAG 942 0.4363 MGANSNLAESTHDLNEQISQLMQCKPLSEQQVKELCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGSANVWKIFTDLFDFFPLTALVESEIFCLHGGLSPSIETLDNIRNFDRVQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDISEQFNHTNSLKLIARAHQLVMDGFNWAHEQKVVTIFSAPNYCYRCGNMASILEVDDCKGHTFIQFEPAPRRGEPDVTRRTPDYFL 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03399 313 SMART pp2a_7 27 297 IPR006186 GO:0016787
Vifa5g03399 313 ProSitePatterns Serine/threonine specific protein phosphatases signature. 118 123 IPR006186 GO:0016787
Vifa5g03399 313 FunFam Serine/threonine-protein phosphatase 6 313 - -
Vifa5g03399 313 SUPERFAMILY Metallo-dependent phosphatases 11 298 IPR029052 -
Vifa5g03399 313 PRINTS Serine/threonine phosphatase family signature 117 141 IPR006186 GO:0016787
Vifa5g03399 313 PRINTS Serine/threonine phosphatase family signature 55 82 IPR006186 GO:0016787
Vifa5g03399 313 PRINTS Serine/threonine phosphatase family signature 237 257 IPR006186 GO:0016787
Vifa5g03399 313 PRINTS Serine/threonine phosphatase family signature 181 208 IPR006186 GO:0016787
Vifa5g03399 313 PRINTS Serine/threonine phosphatase family signature 84 111 IPR006186 GO:0016787
Vifa5g03399 313 PRINTS Serine/threonine phosphatase family signature 152 178 IPR006186 GO:0016787
Vifa5g03399 313 PRINTS Serine/threonine phosphatase family signature 259 275 IPR006186 GO:0016787
Vifa5g03399 313 Gene3D - 6 313 IPR029052 -
Vifa5g03399 313 Pfam Calcineurin-like phosphoesterase 55 246 IPR004843 GO:0016787
Vifa5g03399 313 CDD MPP_PP2A_PP4_PP6 13 297 - -
Vifa5g03399 313 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 12 313 IPR047129 GO:0004722
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03399 Vifa-Chr5 1118500929 1118505807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03399 15 243 Calmodulin-binding Proteins AT5G63870 33.948 1.43e-32 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03399 K04382 - gmx:100775812 641.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03399 5 1118500929 1118505807 Vifa5g03399 5 1118500929 1118505807 ECH