Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03395 ATGAGGTTGAGGTCTCTCTTACAACCAGAGCATTGGAAGTGTTTACGGCTGCACCCTCTCTACTCGATCATGGCTGAAACCGTCGTTGCTGCCCCCGTCGCCGTCGAAGTCGATCCCAATCAAATCGAAGTCAAGCTCTTCAACAGATGGAGCTTCGACGATATTCAGCTTAGTGATGTGTCTCTTAGTGATTACATTGGGGTTCAACCATCGAAACATGCTACATATGTGCCTCACACTGCTGGTAGGTACTCAGTGAAGCGTTTCAGGAAGGCCCAGTGCCCCATTGTTGAGAGGCTCACCAACTCTCTTATGATGCACGGGAGGAACAATGGAAAGAAACTCAAGGCTGTTAGGATTATTAAGCATGCCATGGAGATCATTCACTTGCTAACTGATCTGAATCCAATTCAAGTGATTGTTGATGCTGTTGTCAACAGTGGTCCCAGAGAAGATGCAACTAGAATCGGGTCTGCTGGAGTTGTTAGGAGGCAGGCTGTTGATATCTCCCCTCTTCGCCGTGTTAATCAGGCCATCTATCTTCTTACAACAGGTGCCCGTGAAGCTGCATTTAGGAACATTAAGACTATTGCTGAATGCTTAGCTGATGAACTTATTAATGCTGCCAAAGGTTCATCCAACAGCTATGCTATCAAGAAAAAGGATGAGATAGAGAGAGTTGCCAAGGCTAATCGTTAA 699 0.4607 MRLRSLLQPEHWKCLRLHPLYSIMAETVVAAPVAVEVDPNQIEVKLFNRWSFDDIQLSDVSLSDYIGVQPSKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLKAVRIIKHAMEIIHLLTDLNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03395 232 ProSitePatterns Ribosomal protein S7 signature. 98 124 IPR020606 GO:0003723|GO:0003735|GO:0006412
Vifa5g03395 232 PIRSF RPS7p_RPS7a_RPS5e_RPS7o 1 232 IPR000235 GO:0006412
Vifa5g03395 232 PANTHER RIBOSOMAL PROTEIN S7 31 232 IPR000235 GO:0006412
Vifa5g03395 232 Gene3D Ribosomal protein S7 domain 25 232 IPR036823 -
Vifa5g03395 232 CDD uS7_Eukaryote 45 232 IPR005716 GO:0003735|GO:0006412|GO:0015935
Vifa5g03395 232 NCBIfam 30S ribosomal protein S7 43 232 IPR005716 GO:0003735|GO:0006412|GO:0015935
Vifa5g03395 232 FunFam 40S ribosomal protein S5 28 232 - -
Vifa5g03395 232 Pfam Ribosomal protein S7p/S5e 86 232 IPR023798 -
Vifa5g03395 232 SUPERFAMILY Ribosomal protein S7 45 232 IPR036823 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03395 Vifa-Chr5 1117464090 1117467754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03395 43 232 Cytoplasmic Ribosomal Protein Gene Family AT2G37270 93.158 5.01e-135 376
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03395 K02989 - gmx:100815850 370.548