Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03393 ATGGCCACCACCAACCCAGCTCCGCCACGACAACTCTCCCAGAAAGAAGCCGACATCCAGATGATGTTAGCCGCCGATGTCCATCTCGGTACAAAGAATTGTGATTTCCAAATGGAAAGATACATTTTTAAGCGCCGCAATGACGGTATTTACATTATTAATCTTGGAAAGACGTGGGAAAAGCTTCAACTTGCTGCTAGGGTTATAGTAGCAATTGAAAACCCTCAGGACATAATTGTTCAATCTGCTAGACCTTATGGACAGAGAGCTGTTCTCAAATTTGCTCAGTATACTGGTGCTCATGCTATTGCTGGTAGACACACTCCTGGTACATTCACCAATCAGCTTCAAACTTCGTTCAGTGAGCCTCGTCTTCTTATCCTCACTGACCCGAGAACCGATCACCAGCCCATCAAGGAAGCTGCACTTGGAAACATTCCCACAATTGCTTTCTGTGACACTGATTCTCCCATGAGATATGTTGATATTGGGATTCCGGCTAACAACAAGGGAAAACATAGCATTGGTTGTCTCTTTTGGCTTTTGGCTAGGATGGTGTTGCAGATGCGTGGTACTATTCGCCCTGGCCTTAAGTGGGATGTCATGGTGGATCTATTCTTCTACAGAGAACCAGAAGAGGCCAAGGAGCAAGAGGAAGATGAAGTTCTTGCTCCAGATTATGCCATTGCCGATTTCAATGCAGCTTCTATTCCCAATGATGGACAATGGCCTGCTGCCATTGATCATACATGGACTGATGCTGCTCCACAACCCATTCCAGCAGTTCCTGCTGTAAACTGGACAGCCCCAGAAGCTGGGGACTGGGGTGAAGCTGTTCCTCCACCACAACAAACAGGTGCTCCCGTAATTGAATCTATCCAAGCGACTGGTTGGGAATAA 900 0.4667 MATTNPAPPRQLSQKEADIQMMLAADVHLGTKNCDFQMERYIFKRRNDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKEQEEDEVLAPDYAIADFNAASIPNDGQWPAAIDHTWTDAAPQPIPAVPAVNWTAPEAGDWGEAVPPPQQTGAPVIESIQATGWE 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03393 299 PANTHER 40S RIBOSOMAL PROTEIN SA 9 298 IPR005707 GO:0003735|GO:0006412|GO:0015935
Vifa5g03393 299 Gene3D - 18 222 - -
Vifa5g03393 299 ProSitePatterns Ribosomal protein S2 signature 2. 123 147 IPR018130 GO:0003735|GO:0005840|GO:0006412
Vifa5g03393 299 Pfam Ribosomal protein S2 22 116 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa5g03393 299 Pfam Ribosomal protein S2 121 186 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa5g03393 299 CDD RPS2 22 188 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa5g03393 299 NCBIfam 30S ribosomal protein S2 14 210 IPR005707 GO:0003735|GO:0006412|GO:0015935
Vifa5g03393 299 FunFam 40S ribosomal protein SA 18 224 - -
Vifa5g03393 299 Hamap 40S ribosomal protein SA [rps-0]. 6 278 IPR027498 GO:0003735|GO:0006412|GO:0015935
Vifa5g03393 299 SUPERFAMILY Ribosomal protein S2 14 204 IPR023591 -
Vifa5g03393 299 PRINTS Ribosomal protein S2 signature 123 140 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa5g03393 299 PRINTS Ribosomal protein S2 signature 49 58 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa5g03393 299 PRINTS Ribosomal protein S2 signature 98 115 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa5g03393 299 PRINTS Ribosomal protein S2 signature 140 151 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa5g03393 299 PRINTS Ribosomal protein S2 signature 161 175 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa5g03393 299 PRINTS Ribosomal protein S2 signature 19 37 IPR001865 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03393 Vifa-Chr5 1117355645 1117357432 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03393 10 299 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 72.789 1.71e-149 418
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03393 K02998 - gmx:100805318 530.406