Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03370 ATGCCGAGTTTCAGAATGATGAACTTCTTCTCCCGTGTCAAAACAAGAAGAACAAAGAAAACCATCCGAAAAAACCGAAACAAAAAGCCTCACAAACCCAGAAACCAAACCTGCATTTCTTCCATTACCAATAATTCCCCACCTCTCATAGAAGAAGATGATAACGAAGAAGGTTTCAGCATCAAAAGCTCTGCCCCGTCACACACCCACGGCGTTCAGCCCTTAGGCAATCTCTATTTCAACCCTGGTTCCATAAACTCCAGAGACACTGGTTTAGGTAATCTCCTTACCCTCACCGATGAACTTGTTCTTGACATTCTAGCGTTTTTGGATGGTACCAGCTTAGGAATTTTGGCTTCTGTTAGCAAATCGTTTTATGTTTTCACTAATCAGGAACCACTTTGGAGGAATCTTGTTTTGGAGAATCTTATTGATGGGTTTCAGTACAATGGGTCATGGAAAACTACTTTTGTTTCTGCTTGTTACCCTTTGTTTGATGTTTCATGTAGTGGTGGTGTTAGGAGTTTCAAAGTTAGAGACTTTTATTCTGATTATCTTTTCCAGAGTTGGTTGTGTGCTAATCTTGAAATGAAACCTGAATGGTTGGAGAGGGATAATATTGTAAGAAAGAGAGGCATTTCGGTTGAGGAATTTGTGATGAGTTTCGAGGAGGTTAATAAGCCGGTGTTGTTGGAAGGATGTATTGATAATTGGGACGCGGTGAGGAAATGGGATAGAGATTATTTGATGAAGTTATGCGGCGATGATGTTAAGTTTGCGGTTGGGCCTGTGGAGATGAAACTCAGAGAGTATTTTGGATATTCAGATCAAGTTAGAGAAGAACGGCCGTTGTATCTGTTTGATCCGAAATTTGCTGAAAAAGTTCCGACGCTGGGTTCTGAATATGAAGTTCCAGTGTATTTTCGGGAGGACTTGTTTGGTGTTTTGGGCAATGAGAGGCCTGACTACAGGTGGATTATTATTGGACCGGCTGGGTCTGGATCGTCTTTCCATGTTGATCCAAATTCAACTTCAGCTTGGAATGCTGTGATCAAGGGGTCGAAGAAATGGATACTGTTTCCTCCGGATGTAATTCCGCCCGGTGTTCATCCTAGTCCTGATGGTGCAGAGGTGGCGTCTCCTGTTTCAATAATGGAATGGTTCATGAACTTTTATGGCGCGACAAAGAATTGGAAAAAGAAACCAATTGAGTGCATATGTAAAGCTGGGGAGGTCATCTTTGTGCCGAATGGATGGTGGCATTTGGTGATCAACTTAGAGGAATCTATTGCCATAACACAAAACTATGTTAGCAGGCCGAATGCGAGCATACTGGTATCTGGAACAACGGATAGAGTGAATTTGCATGATAAGTTTAAGAATGCCATTGAGGCTTCTTTTCCTGGAGAAATTGATGAACTGACCCGAAAAGACGAAGAGAAAAAGATTCAGCAAAGGAAACTTTCCATCTGGGATTCTATTGCAGACTCCAGCGTGGGAGCTTTCAAGTTCTCTTTCTAG 1521 0.4208 MPSFRMMNFFSRVKTRRTKKTIRKNRNKKPHKPRNQTCISSITNNSPPLIEEDDNEEGFSIKSSAPSHTHGVQPLGNLYFNPGSINSRDTGLGNLLTLTDELVLDILAFLDGTSLGILASVSKSFYVFTNQEPLWRNLVLENLIDGFQYNGSWKTTFVSACYPLFDVSCSGGVRSFKVRDFYSDYLFQSWLCANLEMKPEWLERDNIVRKRGISVEEFVMSFEEVNKPVLLEGCIDNWDAVRKWDRDYLMKLCGDDVKFAVGPVEMKLREYFGYSDQVREERPLYLFDPKFAEKVPTLGSEYEVPVYFREDLFGVLGNERPDYRWIIIGPAGSGSSFHVDPNSTSAWNAVIKGSKKWILFPPDVIPPGVHPSPDGAEVASPVSIMEWFMNFYGATKNWKKKPIECICKAGEVIFVPNGWWHLVINLEESIAITQNYVSRPNASILVSGTTDRVNLHDKFKNAIEASFPGEIDELTRKDEEKKIQQRKLSIWDSIADSSVGAFKFSF 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03370 506 ProSiteProfiles F-box domain profile. 92 138 IPR001810 GO:0005515
Vifa5g03370 506 Gene3D Cupin 176 438 - -
Vifa5g03370 506 Pfam Cupin-like domain 217 436 IPR041667 -
Vifa5g03370 506 FunFam F-box protein At1g78280 187 438 - -
Vifa5g03370 506 SMART fbox_2 98 138 IPR001810 GO:0005515
Vifa5g03370 506 SUPERFAMILY Clavaminate synthase-like 209 451 - -
Vifa5g03370 506 MobiDBLite consensus disorder prediction 15 68 - -
Vifa5g03370 506 SUPERFAMILY F-box domain 90 160 IPR036047 GO:0005515
Vifa5g03370 506 SMART cupin_9 284 453 IPR003347 -
Vifa5g03370 506 MobiDBLite consensus disorder prediction 34 49 - -
Vifa5g03370 506 ProSiteProfiles JmjC domain profile. 293 453 IPR003347 -
Vifa5g03370 506 Gene3D - 90 162 - -
Vifa5g03370 506 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 92 503 - -
Vifa5g03370 506 MobiDBLite consensus disorder prediction 15 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03370 Vifa-Chr5 1110927749 1110929389 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03370 83 441 Glycosyltransferase AT1G78280 38.108 2.77e-74 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vifa5g03370 Cupin_8 8.2e-23 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03370 - - lja:Lj1g3v4753250.1 826.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03370 5 1110927749 1110929389 Vifa5g03370 5 1110927749 1110929389 ECH