Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03369 ATGCCGAGTTTCAGAATGATGAACTTCTTCTCCCGTGTCAAAACAAGAAGAACAAAGAAAACCATCCGAAAAAACCGAAACAAAAAGCCTCACAAACCCAGAAACCAAACCTGCATTTCTTCCATTACCAATAATTCCCCACCTCTCATAGAAGAAGATGATAACGAAGAAGGTTTCAGCATCAAAAGCTCTGCCCCGTCACACACCCACGGCGTTCAGCCCTTAGGCAATCTCTATTTCAACCCTGGTTCCATAAACTCCAGAGACACTGGTTTAGGTAATCTCCTTACCCTCACCGATGAACTTGTTCTTGACATTCTAGCGTTTTTGGATGGTACCAGCTTAGGAATTTTGGCTTCTGTTAGCAAATCGTTTTATGTTTTCACTAATCAGGAACCACTTTGGAGGAATCTTGTTTTGGAGAATCTTATTGATGGGTTTCAGTACAATGGGTCATGGAAAACTACTTTTGTTTCTGCTTGTTACCCTTTGTTTGATGTTTCATGTAGTGGTGGTGTTAGGAGTTTCAAAGTTAGAGACTTTTATTCTGATTATCTTTTCCAGAGTTGGTTGTGTGCTAATCTTGAAATGAAACCTGAATGGTTGGAGAGGGATAATATTGTAAGAAAGAGAGGCATTTCGGTTGAGGAATTTGTGATGAGTTTCGAGGAGGTTAATAAGCCGGTGTTGTTGGAAGGATGTATTGATAATTGGGACGCGGTGAGGAAATGGGATAGAGATTATTTGATGAAGTTATGCGGCGATGATGTTAAGTTTGCGGTTGGGCCTGTGGAGATGAAACTCAGAGAGTATTTTGGATATTCAGATCAAGTTAGAGAAGAACGGCCGTTGTATCTGTTTGATCCGAAATTTGCTGAAAAAGTTCCGACGCTGGGTTCTGAATATGAAGTTCCAGTGTATTTTCGGGAGGACTTGTTTGGTGTTTTGGGCAATGAGAGGCCTGACTACAGGTGGATTATTATTGGACCGGCTGGGTCTGGATCGTCTTTCCATGTTGATCCAAATTCAACTTCAGCTTGGAATGCTGTGATCAAGGGGTCGAAGAAATGGATACTGTTTCCTCCGGATGTAATTCCGCCCGGTGTTCATCCTAGTCCTGATGGTGCAGAGGTGGCGTCTCCTGTTTCAATAATGGAATGGTTCATGAACTTTTATGGCGCGACAAAGAATTGGAAAAAGAAACCAATTGAGTGCATATGTAAAGCTGGGGAGGTCATCTTTGTGCCGAATGGATGGTGGCATTTGGTGATCAACTTAGAGGAATCTATTGCCATAACACAAAACTATGTTAGCAGGAGAAATTTATTAAATGTGTTGGATTTTCTTAAAAGGCCGAATGCGAGCATACTGGTATCTGGAACAACGGATAGAGTGAATTTGCATGATAAGTTTAAGAATGCCATTGAGGCTTCTTTTCCTGGAGAAATTGATGAACTGACCCGAAAAGACGAAGAGAAAAAGATTCAGCAAAGGAAACTTTCCATCTGGGATTCTATTGCAGACTCCAGCGTGGGAGCTTTCAAGTTCTCTTTCTAG 1557 0.4162 MPSFRMMNFFSRVKTRRTKKTIRKNRNKKPHKPRNQTCISSITNNSPPLIEEDDNEEGFSIKSSAPSHTHGVQPLGNLYFNPGSINSRDTGLGNLLTLTDELVLDILAFLDGTSLGILASVSKSFYVFTNQEPLWRNLVLENLIDGFQYNGSWKTTFVSACYPLFDVSCSGGVRSFKVRDFYSDYLFQSWLCANLEMKPEWLERDNIVRKRGISVEEFVMSFEEVNKPVLLEGCIDNWDAVRKWDRDYLMKLCGDDVKFAVGPVEMKLREYFGYSDQVREERPLYLFDPKFAEKVPTLGSEYEVPVYFREDLFGVLGNERPDYRWIIIGPAGSGSSFHVDPNSTSAWNAVIKGSKKWILFPPDVIPPGVHPSPDGAEVASPVSIMEWFMNFYGATKNWKKKPIECICKAGEVIFVPNGWWHLVINLEESIAITQNYVSRRNLLNVLDFLKRPNASILVSGTTDRVNLHDKFKNAIEASFPGEIDELTRKDEEKKIQQRKLSIWDSIADSSVGAFKFSF 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03369 518 ProSiteProfiles F-box domain profile. 92 138 IPR001810 GO:0005515
Vifa5g03369 518 Pfam Cupin-like domain 217 436 IPR041667 -
Vifa5g03369 518 Gene3D - 90 162 - -
Vifa5g03369 518 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 92 515 - -
Vifa5g03369 518 SMART cupin_9 284 453 IPR003347 -
Vifa5g03369 518 FunFam F-box protein At1g78280 187 438 - -
Vifa5g03369 518 ProSiteProfiles JmjC domain profile. 293 453 IPR003347 -
Vifa5g03369 518 SMART fbox_2 98 138 IPR001810 GO:0005515
Vifa5g03369 518 Gene3D Cupin 177 438 - -
Vifa5g03369 518 SUPERFAMILY F-box domain 90 160 IPR036047 GO:0005515
Vifa5g03369 518 MobiDBLite consensus disorder prediction 15 68 - -
Vifa5g03369 518 MobiDBLite consensus disorder prediction 34 49 - -
Vifa5g03369 518 SUPERFAMILY Clavaminate synthase-like 209 450 - -
Vifa5g03369 518 MobiDBLite consensus disorder prediction 15 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03369 Vifa-Chr5 1110927749 1110929389 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03369 83 442 Glycosyltransferase AT1G78280 38.005 2.51e-74 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vifa5g03369 Cupin_8 1e-22 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03369 - - lja:Lj1g3v4753250.1 858.211