Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03364 ATGGTAAGAAGCTGGATGAGAGGGGCGAGGTTGATATCATTGTCCTCGCGCTGCCGAAACCATACGATCAACTATTCTCCCTCGTTTCATGCTACAACCATTTTCACAAACCAGCCGCATCCTTCTCACTCTCAATGCCGATTCTTCAACTCTTCTTCTTCTTCAACTTCTTCACCATCATCATCACCACCTTCCTCTAACAAGCTCTTCGTAGGAGGTCTATCATGGTCCGTAGATGAAAAATCCCTCAAAGACGCTTTCTCTTCTTTCGGCGAAGTCACCGAAGTGAGGATAGTTTATGATAAAGACAGTGGTAGAGCTAGAGGCTTTGGGTTTGTTATCTTTTCAAACGAAGATGATGCAAAGTCCGCTAAAGATGCAATGGACGGAAAGGCATTGTTAGGTAGACCATTGAGGATAAATTTTGCTCTCGAAAAAACTCGTGGGGTACCTGTTGTAGTTCCTCGGTTTTCAAATATTGGAAACTTAAACAGGCGCTGA 501 0.4391 MVRSWMRGARLISLSSRCRNHTINYSPSFHATTIFTNQPHPSHSQCRFFNSSSSSTSSPSSSPPSSNKLFVGGLSWSVDEKSLKDAFSSFGEVTEVRIVYDKDSGRARGFGFVIFSNEDDAKSAKDAMDGKALLGRPLRINFALEKTRGVPVVVPRFSNIGNLNRR 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03364 166 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 67 145 IPR000504 GO:0003723
Vifa5g03364 166 SUPERFAMILY RNA-binding domain, RBD 55 151 IPR035979 GO:0003676
Vifa5g03364 166 SMART rrm1_1 68 141 IPR000504 GO:0003723
Vifa5g03364 166 CDD RRM2_NsCP33_like 68 143 - -
Vifa5g03364 166 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 69 139 IPR000504 GO:0003723
Vifa5g03364 166 MobiDBLite consensus disorder prediction 46 67 - -
Vifa5g03364 166 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 23 148 - -
Vifa5g03364 166 Gene3D - 36 149 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03364 Vifa-Chr5 1110908004 1110908681 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03364 65 146 C2H2 Transcription Factor Family AT2G19380 37.805 2.78e-13 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03364 - - psat:127125499 260.381