Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03362 ATGTCAATCGTGTACAAAGACATCTATTCCATTTTTTATATAATCCCGCGATTTTCTGTTTCGGCTTTGGTCTTTATTCTCCTTTCTGAGAAAAACAGTAAGTGGTGTGGCATGGAGGATGGGAATTATGGAAGTGGATTATGGAGAACGAAATCGGAGCAACTAGAATCAGTGGCGGAAGATCTAACGTCGACTCCGGGATCGAGTGAGTCGATCAGAGTGGCGGACGGTGGTAGTGGGAGTCTTACAAGGAAGTCGAGGAGGGCGTCGCCGGGCGGAAGAAACACACACATAAGGAAGGCGAGGAGTGCTCAAACGTCTTTGAAAGTTGAGTTGGATGAGGTTAATAGTGGTGCTGCTCTTAGTAGAGCTTCGAGTTTGGGACTCTCGTTCTCTTTTACTGGATTTTCTGTTCCTCTTGATGAAATCAGTAGCTCCAAACCATTCAGTGATGAAGAAGATATGCCGGAAGATATTGAAGCTGGATTTCATAAGTCAAAGTTTCAACCTGAACCTACTCTACCGATATATCTAAAGTTCACGGATGTGACATACAAGGTAGTGCTCAAAGGCATGACAAAAAGTGTTGACAAAGATATCTTGAAAGGGATCAGTGGTTGTGTAAATCCAGGAGAAGTTTTAGCATTGATGGGTCCCTCAGGAAGTGGAAAAACTTCTTTGTTAAATCTAATTGGAGCTAGGTTGCATCAACCAACTATTGGTGGATCTATTAGTTACAATGATCGACCATATTCCAAGTCCCTGAAAAGCAGGATTGGATTTGTGACACAAGATGATGTTTTGTTTCCTCACTTAACTGTGAAAGAAACATTGACATATGCAGCTCGTTTAAGGTTGCCAAAAACATTAACCAGAGAGCAGAAGGAAAAACGAGCTTTAGATGTTATCTATGAGCTAGGCTTGGAGAGGTGTCAAGACACTATGATAGGAGGTTCGTTTGTTCGAGGAGTATCGGGTGGAGAGAGGAAAAGAGTTTGTATTGGCAACGAGATCATAATCAATCCTTCAGTTTTGTTTCTTGATGAACCAACATCTGGTTTGGATTCTACAACTGCTTTAAGAATAGTTCAAATGCTACATGACATAGCTGAGGCCGGTAAGACGATAGTGACAACAATCCATCAACCATCAAGTAGACTATTTCACAAATTCGATAAGTTGATCCTTTTGGGAAAAGGGAACTTGCTTTACTTTGGAAAAGCATCAGAAGCAATGGACTACTTCAAATTTATAGGGTGTTCTCCTCTCATTACAATGAACCCAGCAGAGTTTTTATTGGATCTTGCAAATGGAAACATGGTTGATATTTCCGTACCATCAGAGTTAGAGGATAAAGTTCATATCGAAAACCCAGAAGCTGAAACATCGAATGGCAAACCATCAGCTGCAGTTGTACAAGAGTACCTAGTGGAGTCATATGAGACTAAAGTAGCAGAAACTGAGAAGAAAAAGCTATTGGTTCCAATTCCTCTTGATGAAGAAATGAAGTCTAAGATTTGTTCACGCAAAAGACAGTGGGGAGCAAATTGGTTAGAGCAATATTCGATATTGTTTTCTCGAGGATTCAAAGAACGCAGACACGACTATTTTAGCTGGTTGAGAATCACACAAGTTCTTTCCACTGCAGTCATTCTAGGATTACTTTGGTGGCAATCAGATGCTAGCAACCCAAAGGGTCTTCAAGACCAGGCAGGATTGCTTTTCTTTATAGCGGTGTTTTGGGGATTTTTTCCTGTGTTCACTGCAATATTCACATTTCCTCAAGAAAGAGCAATGTTGAATAAGGAAAGAGCAACAGATATGTACAGATTAAGTGCATACTTTGTGGCTAGAACTACAAGTGACCTTCCATTAGACCTAGTATTACCAGTACTCTTCCTCCTAGTTGTTTATTTCATGGCTGGTTTGAGACTCAGTGCAGGACCCTTTTTGCTTAGTATTCTTACTGTTTTTCTCTGCATTGTAGCAGCACAGGGACTTGGACTTGCTATTGGAGCAACACTAATGGACTTGAAACGAGCAACGACTTTGGCTTCGGTCACTGTCATGACTTTCATGTTGGCTGGTGGTTTCTTTGTAAAGAATGTCCCTATATTCATATCTTGGATTCGGTACCTATCTTTCAACTATCATACATACAAGCTTTTGCTAAAGGTGCAATATGAACACATTACACCTAGCATAAATGGGATCAGAATTGACAGTGGTATGAATGAGGTTATTGCTTTGATAGCCATGGTATTTGGTTACCGTTTATTGGCATATTTTTCTCTGCGGTGGATGAAAGTTCAACCGTAG 2319 0.4066 MSIVYKDIYSIFYIIPRFSVSALVFILLSEKNSKWCGMEDGNYGSGLWRTKSEQLESVAEDLTSTPGSSESIRVADGGSGSLTRKSRRASPGGRNTHIRKARSAQTSLKVELDEVNSGAALSRASSLGLSFSFTGFSVPLDEISSSKPFSDEEDMPEDIEAGFHKSKFQPEPTLPIYLKFTDVTYKVVLKGMTKSVDKDILKGISGCVNPGEVLALMGPSGSGKTSLLNLIGARLHQPTIGGSISYNDRPYSKSLKSRIGFVTQDDVLFPHLTVKETLTYAARLRLPKTLTREQKEKRALDVIYELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSVLFLDEPTSGLDSTTALRIVQMLHDIAEAGKTIVTTIHQPSSRLFHKFDKLILLGKGNLLYFGKASEAMDYFKFIGCSPLITMNPAEFLLDLANGNMVDISVPSELEDKVHIENPEAETSNGKPSAAVVQEYLVESYETKVAETEKKKLLVPIPLDEEMKSKICSRKRQWGANWLEQYSILFSRGFKERRHDYFSWLRITQVLSTAVILGLLWWQSDASNPKGLQDQAGLLFFIAVFWGFFPVFTAIFTFPQERAMLNKERATDMYRLSAYFVARTTSDLPLDLVLPVLFLLVVYFMAGLRLSAGPFLLSILTVFLCIVAAQGLGLAIGATLMDLKRATTLASVTVMTFMLAGGFFVKNVPIFISWIRYLSFNYHTYKLLLKVQYEHITPSINGIRIDSGMNEVIALIAMVFGYRLLAYFSLRWMKVQP 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03362 772 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 178 424 IPR003439 GO:0005524
Vifa5g03362 772 FunFam ABC transporter G family member 22 188 418 - -
Vifa5g03362 772 Pfam ABC transporter 201 352 IPR003439 GO:0005524
Vifa5g03362 772 SMART AAA_5 210 401 IPR003593 GO:0016887
Vifa5g03362 772 MobiDBLite consensus disorder prediction 61 76 - -
Vifa5g03362 772 Pfam ABC-2 type transporter 519 728 IPR013525 GO:0016020|GO:0140359
Vifa5g03362 772 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 144 761 - -
Vifa5g03362 772 CDD ABCG_EPDR 175 406 - -
Vifa5g03362 772 Gene3D - 177 418 IPR027417 -
Vifa5g03362 772 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 197 417 IPR027417 -
Vifa5g03362 772 ProSitePatterns ABC transporters family signature. 324 338 IPR017871 GO:0005524|GO:0016887
Vifa5g03362 772 MobiDBLite consensus disorder prediction 61 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03362 Vifa-Chr5 1108984282 1108995325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03362 197 438 Calmodulin-binding Proteins AT2G36910 29.317 1.42e-13 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03362 K05681 - gmx:100802030 1143.64