Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03355 ATGGAAAATAAGGGTGAAAATCACATGACATCAGCTGCAGCGTTTGTTGAAGGAGGCGTCCAAGAATCTTCTGATGATGCTTGCAGTATATGTCTTGAAGAGTTCAACGATAGTGATCCTTCAACTGTCACTGTTTGCCGGCACGAGTTTCACCTACAGTGCGTTCTTGAATGGTGTCAAAGAAGCTCTCACTGTCCTATGTGTTGGCAACCTATTAGCTTGAAAGATCCTACCGGACAAGAATTGTTTGAGGGAGTAGAGCAAGAGAGGAATTGGAGGGACACTCCATCAAGAAATGTTAACACCATTCGTCACCAATCTATTGGAAACTTTGGATTTCAAAGTCTTCGCATGGAAGAGAGAATACTTCAAAACTTAGCTATTGTTGCATCAATCGAAAGAAGACACCGTCGTGGTCAAATGGAAGGGAGGGGAACTCAACAACTTGATCATGATCAATCCCAATTCTTATTATTCTCAAATCAACAGACACAACAATTGCAAAATGAAGGTTCTACAAATTCTAGATCTGATACAAATGGCTTAGAAATGCAATCATTTTCAGATACTTTGCGCTCTAAATTTAATGCATTGTCGACCAGATATAAAGAATCAATCTCAAAGGGTACAAGGGATTGGAAAGAAAGATTGTTCTCTCGAAATTCTTCCATGTCAGAACTCGGTCTAAATGCAAGAAAAAAGATGAACCCTGGAATTGCTAGTGTATCACAATCGATGAATAATAGAGTTGTAGATACTTATTTTTCAAATAATTTGGAGGATAGTTCTATGGTAAACTCAAGAGAAATTGATCATGTTGAAGTTAGAGGAGAAGACTCTTCGTGCAATAACAATAGAGCAACTGCTTCTTCTACTAGTTCACATTCAAATTGA 894 0.3826 MENKGENHMTSAAAFVEGGVQESSDDACSICLEEFNDSDPSTVTVCRHEFHLQCVLEWCQRSSHCPMCWQPISLKDPTGQELFEGVEQERNWRDTPSRNVNTIRHQSIGNFGFQSLRMEERILQNLAIVASIERRHRRGQMEGRGTQQLDHDQSQFLLFSNQQTQQLQNEGSTNSRSDTNGLEMQSFSDTLRSKFNALSTRYKESISKGTRDWKERLFSRNSSMSELGLNARKKMNPGIASVSQSMNNRVVDTYFSNNLEDSSMVNSREIDHVEVRGEDSSCNNNRATASSTSSHSN 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03355 297 SMART ring_2 28 68 IPR001841 -
Vifa5g03355 297 FunFam E3 ubiquitin-protein ligase RHF2A isoform X1 6 78 - -
Vifa5g03355 297 SUPERFAMILY RING/U-box 21 75 - -
Vifa5g03355 297 Pfam Ring finger domain 27 68 IPR001841 -
Vifa5g03355 297 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 77 IPR013083 -
Vifa5g03355 297 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 13 77 - -
Vifa5g03355 297 MobiDBLite consensus disorder prediction 274 297 - -
Vifa5g03355 297 MobiDBLite consensus disorder prediction 280 297 - -
Vifa5g03355 297 ProSiteProfiles Zinc finger RING-type profile. 28 68 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03355 Vifa-Chr5 1106780631 1106782094 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03355 11 68 C3H Transcription Factor Family AT5G41350 46.552 1.49e-11 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03355 K19043 - gmx:100819110 273.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03355 5 1106780631 1106782094 Vifa5g03355 5 1106780631 1106782094 ECH