Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03352 ATGGGAAACAACTGTGTTGGATCCAGAAAAGCCTCCAAAGATCAATTCGTTTTTCCATCTATTAACCTTCTTCCAGCTTCATGGTCATGGTCACACACTGTTCAACAACACCCACCACCTGTTTGTCAAATTGATTCACAACCAGTTATTATCTTCAAGGAACAACATCCTAGACCAACCAATCCAAAACCGATGATGATGTTGCCTAATATTAAGAGGGTCCGACCAAAAAGTGCTGGACTTAAAGCAGAATCAGTTTTGCTAACAAACTCTGGTTCTTTTAGTGAGTATTATGAGATGGGAGATGAGCTTGGGAAAGGACAATATGGTGTAACTTCGCTTTGTTTCGAGAAAGCGACCCGGAAAAAATATGCATGCAAGTGTATTCCTAAGGTGAAATTGGTGAAAGAAGATGATTTGGAGGATGTGAGGAGGGAGATTCAGATAATGCATCATTTGGTTGGGAGTTCTAATGTGGTGTCTATTAAAGGAGCTTATGAGGATTCTGTTCTTGTTTATATTGTCATGGAGTTATGTGAAGGGGGTGAGTTGTTTGATAGGATTGTTCAAAGGGATCATTATACTGAAAGAAAAGCAGCTAAACTTGCTAGGACTATTGTTAGTATAGTTGAGTCTTGCCACTCACTTGGAGTAATGCATCGTGATCTTAAACCGGAGAATTTTCTTTTCGTTGATGGAGATGAAGATTCAACTCTTAAGGCAATTGATTTTGGAATGTCTGTTTTCCTCAAACCAGGAGAAAAGTTTAGTGATGTAGTAGGAAGTGCTTATTATATTGCACCCGAGATTCTCAGACAGAGTTATGGTCCAGAAGCTGATGTCTGGAGTGCTGGTGTGATCATATACCTTCTCCTATGTGGAACAGCTCCCTTTTATGGTGAATTAGAAACAGAGATATTTCATGAGATTTTGCATGGTGAACTTGATTTCTTTTCGGATCCTTGGCCAAGTATCTCGGAAAGTGCAAAAGACTTGGTTAAGAAGATGCTTGTTAGAGATCCTAGTAAAAGGATAACAGCACATGAAGTTCTTTGCCACCCTTGGATTCAGATTGATGGAGTTGCTCCAGACAAGCCGCTTGATTCCGCAGTTTTGAGTCGTCTAAAGCAATTTTCTGCTATGAACAAGCTCAAGAAAATGGCTCTTAGAGTTATTGCTGAGAATCTCTCTGAAGAAGAAATTTCTGGGTTGAAAGAATTATTTAAGATGATAGACACTGACAACACCGGTCAAATTACTTTTGAAAAACTCAAGGCTGGACTGAAAATGTTCGGCGCAAATCTCAATGAATTTGAGATTTTTGATCTATTGAATGCTGCAGATGTAGATAATAGTGGCACAATTGACTATGGAGAATTCATAGCTGCAACATTGCATTTGAACAAAGTTGGTAGGGAAGATAATTTAGTTACAGCTTTTTCATATTTTGATAAAGACGGAAGTGGCTACATCACTCAAGATGAGATTCAAAAGGTTTGTAAAGAATTTGGCATGGAAGATGTCCACTTAGAGGAAATGATCCAAGAAGCTGATCAAAATAATGATGGACAAATAGACTACAGCGAATTCGTTGCTATGATGCTGAGAGGCAATGCAGATTTAGGCAATAGTGGTTCTAAGTGTAGAAGCACTAGCTTTAACATTGGATTAAGAAAGATAGAGGCACAAACAGTATGTTAA 1701 0.3857 MGNNCVGSRKASKDQFVFPSINLLPASWSWSHTVQQHPPPVCQIDSQPVIIFKEQHPRPTNPKPMMMLPNIKRVRPKSAGLKAESVLLTNSGSFSEYYEMGDELGKGQYGVTSLCFEKATRKKYACKCIPKVKLVKEDDLEDVRREIQIMHHLVGSSNVVSIKGAYEDSVLVYIVMELCEGGELFDRIVQRDHYTERKAAKLARTIVSIVESCHSLGVMHRDLKPENFLFVDGDEDSTLKAIDFGMSVFLKPGEKFSDVVGSAYYIAPEILRQSYGPEADVWSAGVIIYLLLCGTAPFYGELETEIFHEILHGELDFFSDPWPSISESAKDLVKKMLVRDPSKRITAHEVLCHPWIQIDGVAPDKPLDSAVLSRLKQFSAMNKLKKMALRVIAENLSEEEISGLKELFKMIDTDNTGQITFEKLKAGLKMFGANLNEFEIFDLLNAADVDNSGTIDYGEFIAATLHLNKVGREDNLVTAFSYFDKDGSGYITQDEIQKVCKEFGMEDVHLEEMIQEADQNNDGQIDYSEFVAMMLRGNADLGNSGSKCRSTSFNIGLRKIEAQTVC 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03352 566 CDD STKc_CAMK 98 355 - -
Vifa5g03352 566 Gene3D Phosphorylase Kinase; domain 1 100 183 - -
Vifa5g03352 566 ProSitePatterns EF-hand calcium-binding domain. 448 460 IPR018247 -
Vifa5g03352 566 FunFam calcium-dependent protein kinase 1 184 363 - -
Vifa5g03352 566 Pfam EF-hand domain pair 416 466 IPR002048 GO:0005509
Vifa5g03352 566 ProSiteProfiles EF-hand calcium-binding domain profile. 435 470 IPR002048 GO:0005509
Vifa5g03352 566 ProSitePatterns Protein kinases ATP-binding region signature. 104 127 IPR017441 GO:0005524
Vifa5g03352 566 PANTHER SERINE/THREONINE-PROTEIN KINASE 88 530 - -
Vifa5g03352 566 CDD EFh 479 534 IPR002048 GO:0005509
Vifa5g03352 566 SUPERFAMILY EF-hand 395 536 IPR011992 -
Vifa5g03352 566 Pfam EF-hand domain pair 475 534 IPR002048 GO:0005509
Vifa5g03352 566 SMART efh_1 439 467 IPR002048 GO:0005509
Vifa5g03352 566 SMART efh_1 475 503 IPR002048 GO:0005509
Vifa5g03352 566 SMART efh_1 509 537 IPR002048 GO:0005509
Vifa5g03352 566 SMART efh_1 403 431 IPR002048 GO:0005509
Vifa5g03352 566 ProSitePatterns EF-hand calcium-binding domain. 518 530 IPR018247 -
Vifa5g03352 566 FunFam Calcium-dependent protein kinase 1 364 538 - -
Vifa5g03352 566 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
Vifa5g03352 566 ProSiteProfiles EF-hand calcium-binding domain profile. 509 540 IPR002048 GO:0005509
Vifa5g03352 566 ProSiteProfiles EF-hand calcium-binding domain profile. 399 434 IPR002048 GO:0005509
Vifa5g03352 566 Gene3D - 364 537 - -
Vifa5g03352 566 ProSiteProfiles EF-hand calcium-binding domain profile. 471 506 IPR002048 GO:0005509
Vifa5g03352 566 ProSitePatterns EF-hand calcium-binding domain. 484 496 IPR018247 -
Vifa5g03352 566 ProSiteProfiles Protein kinase domain profile. 98 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g03352 566 Gene3D Transferase(Phosphotransferase) domain 1 184 363 - -
Vifa5g03352 566 SMART serkin_6 98 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g03352 566 SUPERFAMILY Protein kinase-like (PK-like) 96 357 IPR011009 -
Vifa5g03352 566 FunFam Calcium-dependent protein kinase 1 100 183 - -
Vifa5g03352 566 Pfam Protein kinase domain 98 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03352 Vifa-Chr5 1105799934 1105802573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03352 54 538 EF-hand Containing Proteins AT3G10660 69.691 0.0 724
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vifa5g03352 Pkinase 3.4e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03352 K13412 - gmx:100814475 788.875