Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03339 ATGGCAAGAATCAGAAAAAGGAAGATCACATCCAAACTGATTGAGAATTTTAGTCAGAGAAAAATATGTTATAAGACAAGATTGAAAGGGTTGTTCACTAAAATGAATCAAGTGACAACCCTTTGTGATCTTGAGGCATGTGCGGTTGTGTTTGGTCCAGGTGATAGAACACCTGTAATGTGGCCATCTCGTGATGTAGCTGAAAGACTAATACATAAATTAGAGTCGATGTCAGAATGTTTACGATCTAAAAATGTGACTGATCAATTATCTTTTTTGAAGGATAAAGGTGAAAGGCTTCAAGCAACCCTTGACAAGATGAAGGAAGATAATGAAGATAGACTAATGGGAACTTACATGTATCAAATTGAGAATGAAGGTAAGCCTTTAAGTGATTTTGAACCTAGTGTGTTGAATCGTTTGATTAGGTTTATGCTGAAAAAGTATAAGATATTTAGTCAAAAAGAAGAGTACTATTTTCCTCCTCCACCACCACTTCCTTCAATGTCTCGTCCTTTAGATGATAACAATGGGGCAGATTATGAGATAAACACAAATGAACAAAGTTTGAACCAACAACCATTGTTAGATTTGGTTTACCAAAGCGATCGAATGGTAACTGATTTTGATAACAATGTTGGTAGTAGCATAGGGCCACTACCACATGAAAATTTTGAAGGTTTTAACAATAGTGGCAACGGTATCCCACAAGGAAATTCAGAAGGCTTCCCTAACAACAAGTTAGGAATAGCAATACAAGCAAACCCTAGTGTTGGTGGTGGTGATACGATGTTCCCTAGAGAGAATTTTGGAGTTTTTCTTAACAGCATTGATAGAAGCATGGGAATACCACCATACGCAAATCCTAGGGTTAGGGTTGATGAGTTTTTTCCTCAAGGAAAATTTGATGGTTTTAATGGTGGAAGTACTTCGAGAGTGTTTAATGAGGGAAACAATGGAGGTTTTAATGGCGAAAATTACTCGGGCAATGGTGAGAATCATCAATCAAATTTATTTCCTCAAGGTGATTTAAAAGGTTTTAATGGTATCCCTACCAATGATGGAAGTGGCACGACTATGTCAATACCTTCGAACATCAATGAAGACAACAACAATGGAAGACCTATGGAAAGTTTCAATGGAAACTTTGGTGACAATAACTATTGA 1167 0.3676 MARIRKRKITSKLIENFSQRKICYKTRLKGLFTKMNQVTTLCDLEACAVVFGPGDRTPVMWPSRDVAERLIHKLESMSECLRSKNVTDQLSFLKDKGERLQATLDKMKEDNEDRLMGTYMYQIENEGKPLSDFEPSVLNRLIRFMLKKYKIFSQKEEYYFPPPPPLPSMSRPLDDNNGADYEINTNEQSLNQQPLLDLVYQSDRMVTDFDNNVGSSIGPLPHENFEGFNNSGNGIPQGNSEGFPNNKLGIAIQANPSVGGGDTMFPRENFGVFLNSIDRSMGIPPYANPRVRVDEFFPQGKFDGFNGGSTSRVFNEGNNGGFNGENYSGNGENHQSNLFPQGDLKGFNGIPTNDGSGTTMSIPSNINEDNNNGRPMESFNGNFGDNNY 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03339 388 CDD MADS_SRF_like 6 88 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vifa5g03339 388 SMART madsneu2 4 63 IPR002100 GO:0003677|GO:0046983
Vifa5g03339 388 ProSiteProfiles MADS-box domain profile. 4 56 IPR002100 GO:0003677|GO:0046983
Vifa5g03339 388 Coils Coil 90 110 - -
Vifa5g03339 388 Gene3D - 17 100 IPR036879 GO:0003677|GO:0046983
Vifa5g03339 388 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 14 56 IPR002100 GO:0003677|GO:0046983
Vifa5g03339 388 SUPERFAMILY SRF-like 6 95 IPR036879 GO:0003677|GO:0046983
Vifa5g03339 388 MobiDBLite consensus disorder prediction 365 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03339 Vifa-Chr5 1102990745 1102991911 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03339 6 121 Type I MADS-box Gene Family AT1G65300 34.483 3.31e-19 85.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vifa5g03339 SRF-TF 2.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03339 - - mtr:25491525 271.552