Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03335 ATGGCTATGCAAACTGTTTATGTGAAAGAACATGAAGGGATTGCACACAATTTTGTGGGGCAATTGTCATCTGGTAATAGTAATTCAGCAACAGCACCATGGTGGAGTGGTTTTGGATCTCAATCTGTTTATGGAGAGGCTGGTGGTGGACAAATCAAATCGTTTTCGTTAGAGCCGTCTTTCGCTGTCGTTGACCAACTTGCTGGAAATAAGCAATCTGGTAGAGGAGGAGGTGAACATGTGATGGGGAAAGGGCATGGCAATCAGTTTACTATCTTTCCAGATGATTTCAAAATGTCAGGTGATGCACAAAAGCCTCATACAGCCATATCACTGCAGTCATCACTCCCCGATACCCCGACTCATTTCGAGCTAGGATTTAGTCAGCCTATGATCTGTACGAAATATCCTTACGCAGATCAATTTTATGGACTCATTTCAACTTATGGACCTCAAGTTCCGGGACGCATAATGCTGCCACTTAACATGACATCTGATGATGGACCAATATATGTAAATGCTAAGCAGTATCATGGAATTATTAGACGCCGACAGTCCCGCGCCAAAGCTGTTCTTGGTCAGAAATTGATCAAACGTCGCAAGCCCTACATGCACGAGTCTCGTCATCTCCATGCAATGCGGCGACCAAGAGGATGCGGTGGCCGGTTCTTGAACACAAAGAAACCATCCAAAGGAGATGGTAAAAGTGTAAGCAAAGTGCATAAATTCTGCGGTCAACAATTGCAGTGCAGCGGCTCTCCTAGTTCTGAACTCTTAGAATCTTATGTTGGAACTTTAAACTCGTCAAAAGAAACAAACGGTAGCAGTCCGAATATTTCCGGGTCCGAGGTGACTAGTTTGTATTCAAGGGGAAATCTTGGCAGCTTTTCCCTCAATCATCTTGGACCTGGTGTCCACTCGTTGGCAGATATGATCGATGGTGGGCGTGGCGTTATCATGCCCACCAAATGGGTTACAACAGCTGGCAACTGCTGTAACCTTGAAGCTTGA 1011 0.451 MAMQTVYVKEHEGIAHNFVGQLSSGNSNSATAPWWSGFGSQSVYGEAGGGQIKSFSLEPSFAVVDQLAGNKQSGRGGGEHVMGKGHGNQFTIFPDDFKMSGDAQKPHTAISLQSSLPDTPTHFELGFSQPMICTKYPYADQFYGLISTYGPQVPGRIMLPLNMTSDDGPIYVNAKQYHGIIRRRQSRAKAVLGQKLIKRRKPYMHESRHLHAMRRPRGCGGRFLNTKKPSKGDGKSVSKVHKFCGQQLQCSGSPSSELLESYVGTLNSSKETNGSSPNISGSEVTSLYSRGNLGSFSLNHLGPGVHSLADMIDGGRGVIMPTKWVTTAGNCCNLEA 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03335 336 PRINTS CCAAT-binding transcription factor subunit B signature 169 191 IPR001289 GO:0003700|GO:0006355
Vifa5g03335 336 PRINTS CCAAT-binding transcription factor subunit B signature 200 223 IPR001289 GO:0003700|GO:0006355
Vifa5g03335 336 SMART cbf3 165 226 IPR001289 GO:0003700|GO:0006355
Vifa5g03335 336 MobiDBLite consensus disorder prediction 215 237 - -
Vifa5g03335 336 Gene3D - 166 228 - -
Vifa5g03335 336 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 169 223 IPR001289 GO:0003700|GO:0006355
Vifa5g03335 336 ProSiteProfiles NF-YA/HAP2 family profile. 166 226 IPR001289 GO:0003700|GO:0006355
Vifa5g03335 336 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 78 286 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03335 Vifa-Chr5 1101215574 1101217709 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03335 1 335 CCAAT-HAP2 Transcription Factor Family AT3G05690 41.737 8.80e-58 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Vifa5g03335 CBFB_NFYA 8.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03335 K08064 - gmx:100527677 473.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03335 5 1101215574 1101217709 Vifa3g00754 3 162767587 162769485 PCT