Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03334 ATGGCTTCTACTACACCTTCTGTTTCCTCTTATATCTCCAACAGAATCTACAACCTTTCATTCACACACTCTTCCATTTCTCTCACGTCAAACCACCCTCAAAGACCCATTTCCCATAAACCCCTCAATCTCATCCTCAAGTCTCAAAGTTTCACTCTTTCCCCTCTCCCACTTCAATCTCTTCAACCCCCATTTGCTGCAGCAGATGGATTTGAAACTACTCAAGACAACATAGTTTCTCAAGAGGAACAAGAACAAGAAACAGAACCAGAAACAGAACAGGAAACCTCTGATAATAAACCACAGAAAGAGGAAGAACAGAAAGTGTCAACCTCGGACGATGCTGGAAGACTCTATATTGGAAATTTGCCGTTTTCATTGACTTCTTCCGAATTGTCTGAGATATTTGCAGAAGCTGGCACTGTCGTATCTGTTGAGATGGTCTATGATCGAGTTACAGCCAGAAGCCGAGGATTTGCATTTGTTACAATGAAGAGTGTCGAAGAAGCTGAAGCAGCAATTCAAATGTTTGATGGCTCTCAAGTTGGTGGTAGGAGTGCTAAGGTGAACTTTCCAGAAGTGCCTAAAGGGGGTGAAAGGTTAGTAATGAGGCAAAAAAATAGAATCAGCAACCAAGGCTTTGTAGACAGTCCTCACAAGATCTATGCTGGAAACCTTGGCTGGGGAGTGAACTCTCAGGATCTTAGAGATGCCTTTGCAGAACAGCCAGGAATATTGAGTGCTAGAGTCGTCTATGAGAGGGACAATGGAAGATCTCGAGGTTTTGGGTTTGTTACTTTTGAAACTGCTGAGGATTTACAGGCTGCTTTGAATGCTATGAATGGCGTGGAGGTTCAAGATCGGCCGTTGCGATTGAATTTGGCTGCAGAGAGGAAATCTTCATCTCCTCCAACAGTAATTGAGGAAAGTACATCAAGCAATGTTGATAGTTCGGAATTGGTGTCTAGCGCAAGTGCTTGA 981 0.4332 MASTTPSVSSYISNRIYNLSFTHSSISLTSNHPQRPISHKPLNLILKSQSFTLSPLPLQSLQPPFAAADGFETTQDNIVSQEEQEQETEPETEQETSDNKPQKEEEQKVSTSDDAGRLYIGNLPFSLTSSELSEIFAEAGTVVSVEMVYDRVTARSRGFAFVTMKSVEEAEAAIQMFDGSQVGGRSAKVNFPEVPKGGERLVMRQKNRISNQGFVDSPHKIYAGNLGWGVNSQDLRDAFAEQPGILSARVVYERDNGRSRGFGFVTFETAEDLQAALNAMNGVEVQDRPLRLNLAAERKSSSPPTVIEESTSSNVDSSELVSSASA 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03334 326 Gene3D - 200 304 IPR012677 -
Vifa5g03334 326 MobiDBLite consensus disorder prediction 298 326 - -
Vifa5g03334 326 Gene3D - 70 199 IPR012677 -
Vifa5g03334 326 MobiDBLite consensus disorder prediction 93 112 - -
Vifa5g03334 326 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 194 IPR000504 GO:0003723
Vifa5g03334 326 MobiDBLite consensus disorder prediction 78 114 - -
Vifa5g03334 326 CDD RRM2_NsCP33_like 220 295 - -
Vifa5g03334 326 PANTHER OS02G0815200 PROTEIN 43 299 - -
Vifa5g03334 326 SUPERFAMILY RNA-binding domain, RBD 113 195 IPR035979 GO:0003676
Vifa5g03334 326 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 118 186 IPR000504 GO:0003723
Vifa5g03334 326 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 221 291 IPR000504 GO:0003723
Vifa5g03334 326 SMART rrm1_1 220 293 IPR000504 GO:0003723
Vifa5g03334 326 SMART rrm1_1 117 190 IPR000504 GO:0003723
Vifa5g03334 326 CDD RRM1_PSRP2_like 117 196 - -
Vifa5g03334 326 MobiDBLite consensus disorder prediction 295 326 - -
Vifa5g03334 326 FunFam 33 kDa ribonucleoprotein, chloroplastic 201 305 - -
Vifa5g03334 326 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 219 297 IPR000504 GO:0003723
Vifa5g03334 326 SUPERFAMILY RNA-binding domain, RBD 211 301 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03334 Vifa-Chr5 1100758906 1100760464 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03334 103 299 Eukaryotic Initiation Factors Gene Family AT3G16380 32.836 6.85e-23 97.4