Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03332 ATGAACGACTTACTCTCCGTCCAAAACGACAACAGCCACCACCACCACCACCATGTCATCCATATGACGGAAAGCACCACCACCACGGTGACCACACTCAACAAATTCTTTGAAGAAGTCGAGTCGGTGAAGGAAGAGTTGAAAGAGTTGGAGAAACTCCGCATAAGTCTGAGAGCCTCGCATGGGAAGAGCAAAAGCCTTCACACCGCCACCGCGGTGAAGGAGCTTCGTTCTCGAATGGACTCCGACGTTACTCTGTCGCTCAAGATAGCTAAACTGGTTAAAACTCGATTGGAGCTGCTTGATCGGTCGAACGAAGCGAGCCGGTCGTTGGTTGATTGTGGACCCGGTTCGTCTTCTGATCGAACGCGGTTGGCGGTGGTTGCTGGTTTGAGGAAGAATTTGAGAGATTCGATGGAGAGTTTTAATGTACTCAGGGAGATGATATCGTCGGAGTATAGAGCGACGGTGCAGCGGAGATACTTTACCGTTACCGGAGAGAAAGCTGATGATACAACTCTTGATCTCCTCATCTCTACCGCTGAAAGCGAAACATTTTTACAAAAAGCCATTAAAGAACAAGGGAGAGCAACAGTGATGGAGACAATACAGGAGATTGAGGAGAGACATGGTGCTGTGAAAGAGATAGAGAGAAACCTAAATGAGCTACATCAAGTGTTTTTGGACATGTCTGTAATGGTGGAAGCCCAAAGTGATGAATTGAATGACATTGAGAGACAAATGATGCGAGCAAATTCGTACGTTAGGAAAGGTATCCAACAAATACATGTTGCTAGGAAGCATCAAAAGAATAGCCGTAATTGGACATGTTTTGCCATTTTAGTCCTTCTCATTATCGCTTTGGTTGTAATTCTTCCTATTGTTTTGAAAAATAATTAG 900 0.4511 MNDLLSVQNDNSHHHHHHVIHMTESTTTTVTTLNKFFEEVESVKEELKELEKLRISLRASHGKSKSLHTATAVKELRSRMDSDVTLSLKIAKLVKTRLELLDRSNEASRSLVDCGPGSSSDRTRLAVVAGLRKNLRDSMESFNVLREMISSEYRATVQRRYFTVTGEKADDTTLDLLISTAESETFLQKAIKEQGRATVMETIQEIEERHGAVKEIERNLNELHQVFLDMSVMVEAQSDELNDIERQMMRANSYVRKGIQQIHVARKHQKNSRNWTCFAILVLLIIALVVILPIVLKNN 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03332 299 ProSitePatterns Syntaxin / epimorphin family signature. 209 249 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vifa5g03332 299 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 203 265 IPR000727 -
Vifa5g03332 299 FunFam Syntaxin 132 196 296 - -
Vifa5g03332 299 Gene3D - 192 296 - -
Vifa5g03332 299 Pfam SNARE domain 241 291 IPR000727 -
Vifa5g03332 299 SUPERFAMILY t-snare proteins 33 258 IPR010989 GO:0016020|GO:0016192
Vifa5g03332 299 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 30 160 - -
Vifa5g03332 299 Pfam Syntaxin 35 237 IPR006011 GO:0016020
Vifa5g03332 299 CDD SynN 33 190 IPR006011 GO:0016020
Vifa5g03332 299 SMART tSNARE_6 198 265 IPR000727 -
Vifa5g03332 299 CDD SNARE_syntaxin1-like 202 262 - -
Vifa5g03332 299 SMART SynN_4 28 154 IPR006011 GO:0016020
Vifa5g03332 299 PANTHER SYNTAXIN 38 285 IPR045242 -
Vifa5g03332 299 MobiDBLite consensus disorder prediction 1 23 - -
Vifa5g03332 299 Coils Coil 33 60 - -
Vifa5g03332 299 Gene3D - 31 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03332 Vifa-Chr5 1099911915 1099913923 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03332 25 277 SNARE and Associated Proteins AT3G11820 64.032 1.18e-116 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03332 K08486 - gmx:100808718 366.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03332 5 1099911915 1099913923 Vifa3g00758 3 163315433 163317037 PCT