Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03330 ATGGATCATGATGAGATCGATGTTCCTACCTATTTTCTCTGTCCCATATCATTAGAAATCATGAAGGATCCGGTAACAGTTTCAACCGGCATAACCTACGACAGAGAATGCATCGAAAAATGGCTATTCTCAAAGAACAACAAAACATGTCCTATCACAAAACAACTGCTCTCAGATTACACTCATCTAACACCAAACCACACACTTCGAAGACTCATTCAAGCATGGTGTACACTTAACGCTTCACAAGGAATCCAAAGGATTCCAACTCCAAAACCACCTATCAACAAAATCCAAATCACCAAACTCATCAAACAAGCTTCTCATTCAAATCTCACCATTCAGATTAAATGTCTCAAAACACTTAGATCATTTGCTTCTGGTAGTGAAACAAACAAACGTTGCATGGAAGATGCTGGTGTTGTTGACTTCTTGGCTTCTACTGTGGTAAACAATAGTTGCAACATCGATTCCGCGTCTTTATTATCGTCAGAGACTAATGTTAATCTGGTTGATGAAGCATTAAGCATACTTCATAACCTTCATGTATCTGAAGCTGGATTGAAGAATCTACTAGCTTTCAAAAACGGTCAATTTATCGAGTCCTTAACAAAAGTCTTACAGAAAGGTTTCTTCGAATCAAGAGCTTATGCAGTTTTCTTGCTTAAATCTATGACAGAAGTAGCTGAACCAGTGCAGTTACTCCATCAAAAAACCGAGTTATTCGTCGAACTGGTGCAAGTTTTGAAGGATCAAATATCACAAAAGGTATCAAAAGCGGCCCTACAGACACTAATTATCCTTTGTCCGTGTGGAAGAAACAGAATCAAAGGTGTTGAAGCAGGCACAGTTCCTGTCTTAATAGAGCTTTTGTTAGAGAATTGCAAAGACAGAAAACCAAATGAAATGATGTTGGTTTTATTGGAATGTCTCTGTCAGTGTGCAGAAGGAAGAGCTGAACTTCTGAGACATGGTGCAGGAATGGCTGTTGTTTCGAAGAAGATTCTTAGGGTTTCCTCGGTCGCGAACGATAGAGCTGTCCGGATTCTGTTGTCTGTTTCGAGATTCTCTGCAACTCATAGTGTTGTTCAAGAAATGCTTAAGCTTGGTGTTGTTGCTAAACTGTGTTTGGTTCTTCAAGTTGATTGTGGAAGCAAGACAAAGGAGAAAGCTAGGGAGATACTTAAGATGCATGCTAGGGTTTGGAGGGATTCTCCATGCATACCTACTAATTTGCTTTCTTCATACCCTAATTATATTTGA 1263 0.3927 MDHDEIDVPTYFLCPISLEIMKDPVTVSTGITYDRECIEKWLFSKNNKTCPITKQLLSDYTHLTPNHTLRRLIQAWCTLNASQGIQRIPTPKPPINKIQITKLIKQASHSNLTIQIKCLKTLRSFASGSETNKRCMEDAGVVDFLASTVVNNSCNIDSASLLSSETNVNLVDEALSILHNLHVSEAGLKNLLAFKNGQFIESLTKVLQKGFFESRAYAVFLLKSMTEVAEPVQLLHQKTELFVELVQVLKDQISQKVSKAALQTLIILCPCGRNRIKGVEAGTVPVLIELLLENCKDRKPNEMMLVLLECLCQCAEGRAELLRHGAGMAVVSKKILRVSSVANDRAVRILLSVSRFSATHSVVQEMLKLGVVAKLCLVLQVDCGSKTKEKAREILKMHARVWRDSPCIPTNLLSSYPNYI 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03330 420 Gene3D - 95 406 IPR011989 -
Vifa5g03330 420 Pfam U-box domain 8 78 IPR003613 GO:0004842|GO:0016567
Vifa5g03330 420 PANTHER WDSAM1 PROTEIN 4 409 IPR045185 GO:0061630
Vifa5g03330 420 SUPERFAMILY ARM repeat 100 396 IPR016024 -
Vifa5g03330 420 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 88 IPR013083 -
Vifa5g03330 420 FunFam RING-type E3 ubiquitin transferase 1 86 - -
Vifa5g03330 420 SMART Ubox_2 11 76 IPR003613 GO:0004842|GO:0016567
Vifa5g03330 420 CDD RING-Ubox_PUB 9 59 IPR045210 -
Vifa5g03330 420 SUPERFAMILY RING/U-box 3 81 - -
Vifa5g03330 420 ProSiteProfiles U-box domain profile. 7 83 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03330 Vifa-Chr5 1098776209 1098777471 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03330 1 417 U-box Gene Family AT3G52450 57.895 4.64e-176 497
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03330 - - mtr:25499491 726.087