Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03327 ATGGATCATGATGAGATCGATGTTCCTACCTATTTTCTCTGTCCCATATCATTAGAAATCATGAAGGATCCAGTAACAGTTTCAACCGGCATAACCTACGACAGAGAATGCATCGAAAAATGGCTATTCTCAAAGAACAACAAAACATGTCCTATCACAAAACAACTGCTCTCAGATTACACTCATCTAACACCAAACCACACACTTCGAAGACTCATTCAAGCATGGTGTACACTTAACGCTTCACAAGGAATCCAAAGGATTCCAACTCCAAAACCACCTATCAACAAAACCCAAATCACCAAACTCATCAAACAAGCTTCTCAGTCAAATCTCACCATTCAGATTAAATGTCTCAAAACACTTAGATCATTTGCATCTGGTAGTGAAACAAACAAACGTTGCATGGAAGATGCTGGTGTTGTTGACTTCTTAGCTTCTACCGTGGTAAACAATAGTTGCAACATCGATTCCGCGTCTTTATTATCGTCAGAGACTAATGTTAATCTGGTTGATGAAGCATTAAGCATACTTCATAACCTTCATGTATCTGAAGCTGGATTGAAGAATCTACTAGCTTTCAAAAACAGTCAATTTATCGAGTCCTTAACAAAAGTTTTACAGAAAGGTTTCTTTGAATCAAGAGCTTATGCAGTTTTCTTGCTTAAATCTATGACAGAAGTAGCTGAACCAGTGCAGTTACTCCATCAAAAAACCGAGTTATTCTTCGAACTGGTGCAAGTTTTGAAGGATCAAATATCACAAAAGGTATCAAAAGCGGCCCTTCAGACACTAATTATCCTCTGTCCGTGTGGAAGAAACAGAATCAAAGGTGTTGAAGCAGGAACAGTTCCTGTCTTAATAGAGCTTCTGTTAGAGAATTGCAAAGACAGAAAACCAAATGAAATGATGTTGGTTTTATTGGAACGTCTCTGTCAGTGTGCAGAAGGAAGAGCTGAACTTCTGAGACATGGTGCAGGAATGGCTGTTGTTTCGAAGAAGATTCTTAGGGTTTCCTCCATCGCGAACGATAGAGCTGTCCGGATTCTGTTGTCTGTTTCGAGATTCTCTGCAACTCATAGTGTTGTTCAAGAAATGCTTAAGCTTGGTGTTGTTGCAAAACTGTGTTTGGTTCTTCAAGTTGATTGTGGAAGCAAGACTAAGGAGAAAGCTAGGGAGATACTTAAGATGCATGCTAGGGTTTGGAGGGATTCTCCATGCATACCTAGTAATTTGCTTTCTTCATACCCTAACTATATTTGA 1263 0.3919 MDHDEIDVPTYFLCPISLEIMKDPVTVSTGITYDRECIEKWLFSKNNKTCPITKQLLSDYTHLTPNHTLRRLIQAWCTLNASQGIQRIPTPKPPINKTQITKLIKQASQSNLTIQIKCLKTLRSFASGSETNKRCMEDAGVVDFLASTVVNNSCNIDSASLLSSETNVNLVDEALSILHNLHVSEAGLKNLLAFKNSQFIESLTKVLQKGFFESRAYAVFLLKSMTEVAEPVQLLHQKTELFFELVQVLKDQISQKVSKAALQTLIILCPCGRNRIKGVEAGTVPVLIELLLENCKDRKPNEMMLVLLERLCQCAEGRAELLRHGAGMAVVSKKILRVSSIANDRAVRILLSVSRFSATHSVVQEMLKLGVVAKLCLVLQVDCGSKTKEKAREILKMHARVWRDSPCIPSNLLSSYPNYI 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03327 420 PANTHER WDSAM1 PROTEIN 4 409 IPR045185 GO:0061630
Vifa5g03327 420 SUPERFAMILY RING/U-box 3 81 - -
Vifa5g03327 420 Gene3D - 94 405 IPR011989 -
Vifa5g03327 420 SUPERFAMILY ARM repeat 99 395 IPR016024 -
Vifa5g03327 420 FunFam RING-type E3 ubiquitin transferase 1 86 - -
Vifa5g03327 420 SMART Ubox_2 11 76 IPR003613 GO:0004842|GO:0016567
Vifa5g03327 420 CDD RING-Ubox_PUB 9 59 IPR045210 -
Vifa5g03327 420 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 88 IPR013083 -
Vifa5g03327 420 ProSiteProfiles U-box domain profile. 7 83 IPR003613 GO:0004842|GO:0016567
Vifa5g03327 420 Pfam U-box domain 8 78 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03327 Vifa-Chr5 1098358379 1098359641 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03327 1 417 U-box Gene Family AT3G52450 57.895 1.66e-176 498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03327 - - mtr:25499491 723.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03327 5 1098358379 1098359641 Vifa5g03327 5 1098358379 1098359641 ECH
Vifa5g03327 5 1098358379 1098359641 Vifa3g00775 3 168755539 168756870 PCT
Vifa3g00772 3 168658876 168660204 Vifa5g03327 5 1098358379 1098359641 PCT