Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03322 ATGCCGAGCTTCGCAACGAGGTTTAAAGCTGCAATAAAAAAGATGGATATGCAAGCATCAAAAGAATTCCTAGCCGAACTAAAGGTTCTGACACACGTTCATCACTTGAATTTGGTGCGGCTAATTGGATATTGTGTTGAGGGCTCCTTATTTTTGGTTTATGAATACAGTGAGAATGGAAATCTAAGTCAACATTTGCGCGGCACAGGGAAGGATCCATTATCATGGGCAGCTAGAGTTCAAATTGCATTAGACTCAGCAAGAGGACTTGAATACATTCACGAGCATACAGTTCCTGTCTATATACATAGAGATGTTAAATCAGCAAACATTTTGATAGACAAAAACTTCCGCGGAAAGGTTGCGGATTTTGGTTTGACAAAATTGACTGAATATGGTAGCTCCTCGTTACAAACACGCCTTGTCGGGACGTTTGGATATATGCCTCCTGAGTAA 456 0.4079 MPSFATRFKAAIKKMDMQASKEFLAELKVLTHVHHLNLVRLIGYCVEGSLFLVYEYSENGNLSQHLRGTGKDPLSWAARVQIALDSARGLEYIHEHTVPVYIHRDVKSANILIDKNFRGKVADFGLTKLTEYGSSSLQTRLVGTFGYMPPE 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03322 151 Pfam Protein tyrosine and serine/threonine kinase 7 151 IPR001245 GO:0004672|GO:0006468
Vifa5g03322 151 ProSiteProfiles Protein kinase domain profile. 1 151 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g03322 151 ProSitePatterns Serine/Threonine protein kinases active-site signature. 101 113 IPR008271 GO:0004672|GO:0006468
Vifa5g03322 151 Gene3D Transferase(Phosphotransferase) domain 1 3 151 - -
Vifa5g03322 151 SUPERFAMILY Protein kinase-like (PK-like) 7 151 IPR011009 -
Vifa5g03322 151 SMART serkin_6 6 151 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g03322 151 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 9 151 IPR044812 GO:0019199|GO:0045087
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03322 Vifa-Chr5 1097281187 1097282186 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03322 9 151 Receptor kinase-like Gene Family AT3G21630 80.420 2.27e-79 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vifa5g03322 PK_Tyr_Ser-Thr 3.6e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03322 - K13429 gmx:100802308 273.478