Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03320 ATGGCAACGTACTTTCATGGTAATTCTGAGATTCAATCGAGTGGCGGCGGCGGCGGTGCTGACGGATTACAAACACTTGTTCTCATGAATCCAGGCTATATTCAATACTCAGACGCCACACAGCAGCAACAACAACAGCCTCAGCCGCCATCTCACGCCGCATCGGGTAACTATGTTTTTCTCAACTCGACGGCAGCTGAAAACAACTCCTTCTCATCTCACGCGCCACCTTCCAATACACAACAATTTGTCGGCATCCCACTCAACCACCAGCATCAGCATCATCATCAGCACCAACATCAAATCCACGGCCACCATGAAGTTGTCCCTTCGTTGCATGGCTTCCTTCCTCACATGCAGTACAACCAGTGGAACACAATTGACCCTTCCACGGCGGCGCGTGAAACTCCACGCGCTCAGCAAGGACTTTCTCTAAGCCTATCTTCGCAGCCGGCACGGTTTATGTCTTTTCGAGAAGGTCAGGCGGGTGGTATATCCGGTGGCGGATCGCCGTCTCCGGCTTCTGGGATTACTAATAACGGGAATTCCGGGATTCAGGTGCTGAGTTCGAAGTATTTGAGGGCGGCGCATGAGCTTTTAGAAGAGGTTGTGAATGTGAATAGTGGTGTTGAATTGGGAAAGAAGAACAAGATGAATATCGGAGAATCATCGGGAGTTGGTAGTGGAGGAGATGGTTCAATTATCGTCGGCGGCGAGGGAAGTGGTGGGAAGCGTAGCTCTGAGCTATCAACGGCGGAGAAACAAGAAATACAGATGAAGAAAGCTAAGCTAATTACAATGCTTGATGAGGTGGAGCAAAGATACAGACAGTACCACCATCAAATGGAGGTAGTGGTTTCATCCTTCGAACAAGCAGCCGGAGTTGGTTCCGCCCGAGCCTACACTGCCCTCGCACTGCAAACAATCTCGAAGCAATTTCGGTGTTTGAAAGATGCAATAACAGGACAACTTAGAGCCATAAATAAGAGTTTAGGAGAAGAGGATTGTTTTGGTGGTAAAATTGAAGGTTCAAGGCTGAAATATGTTGATCATCAATTGCGTCAACAGCGCGCTTTACAACAGCTGGGAATGATCCAGCATAATGCTTGGAGACCCCAAAGAGGATTGCCCGAAAGATCTGTTTCTGTTCTTCGTGCTTGGCTCTTCGAGCATTTCCTTCACCCTTATCCCAAGGACTCAGACAAACACATGCTTGCAAAACAAACAGGACTTACTAGGAGTCAGGTTTCTAATTGGTTTATAAATGCTCGAGTTCGACTTTGGAAGCCAATGGTGGAAGAAATGTACTTGGAAGAAATGAAGGAGAATGAACTGAATGCATCAGATGATAAATCAAGCAAAAGCAATGAAGATTCTTCAATGAAAATAACACCCTCTCAAGAGAAAGCTCTTACCTCTGAAACAGACCCTAAAGGTTACAATTCCACACAAGACATTTCGAAAAACCAAGAAACTCAAATCATTTCTGTTTCTAGACCACAAACATCACCACTTGTTGAAAATGTTAGAAACAATTCAGGTTTCAGTTTCATAGGATCGTCGGAATTAGAAGGTATACCTCAAACAAGTCCTAAGAAACCAAGGAACCATGAACTCATGCATACTCCGAATAGTTTCATTGATGTTAAACACAATGAGGCAAGTAACGAGCTGAAATTCGGTGATGAGAGACAGAGTCGAGATGGTTACTCTTTCATGGGAAACCAAACAAACTTCATGGGTGGATTTGGACAATACCCGATGGGCGATATTGGTAGGTTTGATTCAGAACAATTCGCGCCAAGGTTTTCAAGTAACGGTGTTTCACTCACTCTTGGTCTTGATTCAATACAAGGGAATCATCAATCATTTTTACCAAACCAAAACATTCAACTAGGAAGAAACATTGATATAAGCGACACGAATGAGTTTGGTTCCATAAACACTTCTTCTCCTCAATATGAGAGTATCAACATGCAAAATCCGAAAAGGTTTGCTGCACAATTGTTGCCTGATTTTGTGGCATAA 2028 0.4438 MATYFHGNSEIQSSGGGGGADGLQTLVLMNPGYIQYSDATQQQQQQPQPPSHAASGNYVFLNSTAAENNSFSSHAPPSNTQQFVGIPLNHQHQHHHQHQHQIHGHHEVVPSLHGFLPHMQYNQWNTIDPSTAARETPRAQQGLSLSLSSQPARFMSFREGQAGGISGGGSPSPASGITNNGNSGIQVLSSKYLRAAHELLEEVVNVNSGVELGKKNKMNIGESSGVGSGGDGSIIVGGEGSGGKRSSELSTAEKQEIQMKKAKLITMLDEVEQRYRQYHHQMEVVVSSFEQAAGVGSARAYTALALQTISKQFRCLKDAITGQLRAINKSLGEEDCFGGKIEGSRLKYVDHQLRQQRALQQLGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEMKENELNASDDKSSKSNEDSSMKITPSQEKALTSETDPKGYNSTQDISKNQETQIISVSRPQTSPLVENVRNNSGFSFIGSSELEGIPQTSPKKPRNHELMHTPNSFIDVKHNEASNELKFGDERQSRDGYSFMGNQTNFMGGFGQYPMGDIGRFDSEQFAPRFSSNGVSLTLGLDSIQGNHQSFLPNQNIQLGRNIDISDTNEFGSINTSSPQYESINMQNPKRFAAQLLPDFVA 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03320 675 Coils Coil 254 274 - -
Vifa5g03320 675 CDD homeodomain 370 431 IPR001356 GO:0003677
Vifa5g03320 675 ProSiteProfiles 'Homeobox' domain profile. 367 430 IPR001356 GO:0003677
Vifa5g03320 675 MobiDBLite consensus disorder prediction 443 457 - -
Vifa5g03320 675 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 88 457 - -
Vifa5g03320 675 SUPERFAMILY Homeodomain-like 371 437 IPR009057 -
Vifa5g03320 675 Pfam Homeobox KN domain 387 426 IPR008422 GO:0003677|GO:0006355
Vifa5g03320 675 Pfam Associated with HOX 187 321 IPR006563 -
Vifa5g03320 675 MobiDBLite consensus disorder prediction 1 19 - -
Vifa5g03320 675 MobiDBLite consensus disorder prediction 443 485 - -
Vifa5g03320 675 MobiDBLite consensus disorder prediction 222 252 - -
Vifa5g03320 675 MobiDBLite consensus disorder prediction 458 485 - -
Vifa5g03320 675 FunFam BEL1-like homeodomain protein 9 373 435 - -
Vifa5g03320 675 MobiDBLite consensus disorder prediction 1 23 - -
Vifa5g03320 675 SMART prehox3 182 322 IPR006563 -
Vifa5g03320 675 SMART HOX_1 370 434 IPR001356 GO:0003677
Vifa5g03320 675 Gene3D - 373 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03320 Vifa-Chr5 1095803553 1095806975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03320 1 675 Homeobox Transcription Factor Family AT2G35940 48.667 2.54e-166 491
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vifa5g03320 POX 2.3e-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03320 - - gmx:100810901 874.004
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03320 5 1095803553 1095806975 Vifa5g03320 5 1095803553 1095806975 ECH
Vifa5g03320 5 1095803553 1095806975 Vifa3g00779 3 171113000 171115554 PCT