Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03307 ATGGTGCTCAATTTCACTGCCCGTAATCCAAATAAAAAACTTGGTATATATTACGATAAAGTTGAGGCTCATGCATTCTATGAAGGGGCAAGGTTTGCAAATATTGATGTGATCACACACATGAACTCTTTCCGCCAAGACAAGAAAAGCAGTGATCCTATGAGTGGTGTTTTCTCAGGACAACAGTTGTTGATGCTCCATAATGATCAAGTGTCTGAATTCAACAAAGACAAGAGTGTTGGAGTTTATGATATCTATGTGAAATTCTACTTCAGGATTAGGTTCAAACTCGGAGACTCCATTTCTCATAGTTACAAGCCCAAAGTCAAGTGTGACCTCAATGTTTCGATGAATTCTAGGAATAATGCAACTTTTACCTTTACTAGGGTTTTGCCTACGAAGTGCGATGTTCTGTTCTAG 420 0.3857 MVLNFTARNPNKKLGIYYDKVEAHAFYEGARFANIDVITHMNSFRQDKKSSDPMSGVFSGQQLLMLHNDQVSEFNKDKSVGVYDIYVKFYFRIRFKLGDSISHSYKPKVKCDLNVSMNSRNNATFTFTRVLPTKCDVLF 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03307 139 Pfam Late embryogenesis abundant protein 5 111 IPR004864 -
Vifa5g03307 139 PANTHER OS05G0367900 PROTEIN 3 119 IPR044839 GO:0098542
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03307 Vifa-Chr5 1091447458 1091447877 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03307 1 117 SNARE and Associated Proteins AT1G32270 29.060 9.38e-13 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03307 - - psat:127129872 201.06