Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03299 ATGTCCTCCTGCGTCACTATTCTTCGAACATCTCTCATCTTCCAACCGGTGCTTTTTGTTTCACCCGAGCGGTTTTTGAATAAGGAGTTTCTGTCTGCTATCTCTGCTGGGTCAGCTGTCTCACTCGTTGTTATTGACGAAGCACATTGTATATCTGAACGGTCTCACAATTTCCGACCTTCATTCATGAGACTTAGAGCATCACTACTTCATAGAAGTCTTAATGTAGGTTCTGTTCTCGCAATGACAGCAACTGCTACAACCACAACCCTAGATGCCATCATGTCTGCCCTAGATATTCCTTTTACAAATCTTATTCAGAATGCACACTTAAGGGACAATTTGCGTTTGTCGGCGTCTTTGATAAAAAATAGAATGAAAGACCTACTGATTCTGATAAAGTCTCCTCCTTTTGCGGATGTTAAAGGCATCATAGTATACTGCAAATTTCAGTCTGAAACTGATCAAATTAGCAGATACTTGAATGATAACAATATCTCGGCAAAGAGTTATCATAGTGGTATTTTTGCAAAGGAACGTGGCAACGTACAGGAGTTGTTTGCTTCAAACAAGATCAGAGTGGTTGTTGCAACTGTGGCATTTGGTATGGGACTAGATAAAAGAGATGTTGGAGCAGTAATTCATTACAGTTTACCTGGAAGTCTGGAAGATGAAGGAGTAGATGAATATGCAGTGAATAAATTTCTGTCTGAAGTGTTTCCTGCTGACAAAAGCTCCTGTGGGAAAATATGTTCGTTAATCAAAGAATCTGCTTCACGCAGATTTGACATGAAGGAAGAGGGCAGGAACTTCGGGCATTATTCAGTCAGTATGGGAGATGATGAGACATGA 852 0.4049 MSSCVTILRTSLIFQPVLFVSPERFLNKEFLSAISAGSAVSLVVIDEAHCISERSHNFRPSFMRLRASLLHRSLNVGSVLAMTATATTTTLDAIMSALDIPFTNLIQNAHLRDNLRLSASLIKNRMKDLLILIKSPPFADVKGIIVYCKFQSETDQISRYLNDNNISAKSYHSGIFAKERGNVQELFASNKIRVVVATVAFGMGLDKRDVGAVIHYSLPGSLEDEGVDEYAVNKFLSEVFPADKSSCGKICSLIKESASRRFDMKEEGRNFGHYSVSMGDDET 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03299 283 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 104 IPR014001 -
Vifa5g03299 283 PANTHER DNA HELICASE RECQ FAMILY MEMBER 15 224 - -
Vifa5g03299 283 Pfam Helicase conserved C-terminal domain 142 223 IPR001650 -
Vifa5g03299 283 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 41 50 IPR002464 -
Vifa5g03299 283 Gene3D - 112 225 IPR027417 -
Vifa5g03299 283 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 125 283 IPR001650 -
Vifa5g03299 283 SMART helicmild6 155 226 IPR001650 -
Vifa5g03299 283 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 223 IPR027417 -
Vifa5g03299 283 Gene3D - 7 102 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03299 Vifa-Chr5 1089296132 1089299587 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03299 145 223 Eukaryotic Initiation Factors Gene Family AT3G19760 29.114 2.05e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03299 K10730 - gmx:100811214 390.193