LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa5g03298	ATGGCCGATAACCAACCTCAGTTAAACGATTCTTACTATGGACCCGCTATTCCGGCTGCACGAGGACAATCCAACAACCGCTACAATCGTGGTAGTAGTGGTTGTTGCACGCTATTCAGCTTTTTATGGAAACTTGTAGTTGCACTTATTGTTCTTTTTGGTCTCATAATCCTTATCTTCTATCTCATCGTCCAACCCCGCGCCTTCAAAATTTATGTCACGAAAGCCGAGTTAACACAATTCCACTATACCAACAGCACACTACACTACGACATGGTGCTCAACTTTACTGTCCACAATCCAAACAAAAAACTTGGTATCTATTACGATAAAGTTGATGCTCAAGCATTCTATGAAGGGGCAAGGTTTGCGAATGTGGATGTGATCACACACCTGAACTCTTTCCGCCAAGACAAGAAAAGCAGTGACCCTATGAGTGGTGTTCTCTCAGGACAACAGTTGTTGATGCTCCATAATGATCAAGTGTCTGAATTCAACAAAGACAAGAGTGTTGGGGTTTATAACATCAAAGTGAAACTCTACTTTACTATTAGATTCAGACTTGGAGACTCAATATCTAGAAAGTACAAACCTAAGGTCAAGTGCGACCTCACTGTTCCTTTGAGCAACAACAATGGAACTGGATTTACCTTTATTGATCGACTAATACCCACCAAGTGTGATGTTGAGTTCTAG	696	0.4138	MADNQPQLNDSYYGPAIPAARGQSNNRYNRGSSGCCTLFSFLWKLVVALIVLFGLIILIFYLIVQPRAFKIYVTKAELTQFHYTNSTLHYDMVLNFTVHNPNKKLGIYYDKVDAQAFYEGARFANVDVITHLNSFRQDKKSSDPMSGVLSGQQLLMLHNDQVSEFNKDKSVGVYNIKVKLYFTIRFRLGDSISRKYKPKVKCDLTVPLSNNNGTGFTFIDRLIPTKCDVEF	231

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa5g03298	231	Pfam	Late embryogenesis abundant protein	96	202	IPR004864	-
	Vifa5g03298	231	PANTHER	OS05G0367900 PROTEIN	34	208	IPR044839	GO:0098542

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa5g03298	Vifa-Chr5	1089260150	1089260845	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa5g03298	63	215	SNARE and Associated Proteins	AT1G32270	31.210	3.00e-17	77.4

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa5g03298	-		-	gmx:100807701	288.115