Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03297 ATGGCAGATAACAAGCAACCACAATTGAACGGTGCATACTACGGCCCCGCCATTCCACCACCACCACAACCCCGTCCATACCACCACAGAAGCCGAAGTTGTTGTTGCTGTCTCTTCAGTTTCTTTTGGAAGCTCCTTGTCACACTCATCGTTCTTGCTGGTCTCGCTGTCCTTATCTTCTATCTCGTTGTCCATCCCCGCCCCTTCAAATTCTATGTAACAGAAGCCAATCTAACTGAATTCGACAACAAAAACAACACACTACACTACAACATGGTTCTCAATTTCACAGCACGTAACCCAAACAAAAAACTCAGCATCTATTACGACAAAGTTGAGGCTCTAGCATTCTACAAAGGGGAGAGGCTTACTAATAATGTTGATGTGATCACACACATGAACTCATTTCGTCAATATAAGAAGAGCAGTGACCCCATGAGCGCTGTTTTCTCAGGACAAAAACTAATGTTGCTCGACAACGATCAAGTCTCTGAGTTCAACAAAGATAAGAGTGTTGAGGTTTATGATATCTATGTGAAACTCTACTTCAGGGTTAGGTTCAGACTTGGAGATTTGATATCTGGTCATTACAAGCCTAAGGTGAAATGTGATCTGAAAGTCCCTTTGAATTCTAATAAGACCACTGCAACGTTTGTGCCATCCAAGTGCCATGTTGATTTCTACTGA 687 0.4265 MADNKQPQLNGAYYGPAIPPPPQPRPYHHRSRSCCCCLFSFFWKLLVTLIVLAGLAVLIFYLVVHPRPFKFYVTEANLTEFDNKNNTLHYNMVLNFTARNPNKKLSIYYDKVEALAFYKGERLTNNVDVITHMNSFRQYKKSSDPMSAVFSGQKLMLLDNDQVSEFNKDKSVEVYDIYVKLYFRVRFRLGDLISGHYKPKVKCDLKVPLNSNKTTATFVPSKCHVDFY 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03297 228 Pfam Late embryogenesis abundant protein 96 203 IPR004864 -
Vifa5g03297 228 PANTHER OS05G0367900 PROTEIN 32 214 IPR044839 GO:0098542
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03297 Vifa-Chr5 1088610917 1088611603 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03297 63 217 SNARE and Associated Proteins AT1G32270 34.615 7.87e-20 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03297 - - gmx:100795302 295.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03297 5 1088610917 1088611603 Vifa3g00794 3 177315328 177316062 PCT