Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03296 ATGGCAGATAACAAGCAACCACAATTGAACGGTGCATACTACGGCCCCGCCATTCCACCACCACCACAACCCCGTCCATACCACCACAGAAGCAGAAGCTGTTGTTGCTGTCTCTTCAGTTTCTTCTGGAAGCTCCTTGTCACACTCATCGTTCTTGCTGGTCTCGCTGTCCTTATCTTCTACCTTGTTGTTCATCCCCGCCCCTTCAAATTCTATGTCACAGAAGCCAATCTAACTGAATTCGACAACAAAAACAACACACTACACTACAACATGGTTCTCAATTTCACAGCACGTAACCCAAACAAAAAACTCAGCATCTATTACGACAAAGTTGAGGCTCTAGCATTCTACAAAGGGGAGAGGCTTACTAATAATGTTGATGTGATCACACACATGAACTCATTTCGTCAATATAAGAAGAGCAGTGACCCAATGAGCGTTGTTTTCTCAGGACAAAAACTAATGTTGCTCGACAACGATCAAGTCTCAGAGTTCAACAAAGATAAGAGTGTTGAGGTTTATGATATCTATGTGAAACTCTACTTCAGGGTTAGGTTCAGACTTGGAGATTTGATATCTGGTCATTACAAACCTAAGGTGAAATGTGATCTGAAAGTCCCTTTGAATTCTAATAAGACCACTGCAGCGTTTGTGCCATCCAAGTGCCATGTTGATTTCTACTGA 687 0.425 MADNKQPQLNGAYYGPAIPPPPQPRPYHHRSRSCCCCLFSFFWKLLVTLIVLAGLAVLIFYLVVHPRPFKFYVTEANLTEFDNKNNTLHYNMVLNFTARNPNKKLSIYYDKVEALAFYKGERLTNNVDVITHMNSFRQYKKSSDPMSVVFSGQKLMLLDNDQVSEFNKDKSVEVYDIYVKLYFRVRFRLGDLISGHYKPKVKCDLKVPLNSNKTTAAFVPSKCHVDFY 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03296 228 PANTHER OS05G0367900 PROTEIN 32 213 IPR044839 GO:0098542
Vifa5g03296 228 Pfam Late embryogenesis abundant protein 96 203 IPR004864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03296 Vifa-Chr5 1088520976 1088521662 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03296 63 216 SNARE and Associated Proteins AT1G32270 34.810 5.33e-19 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03296 - - gmx:100795302 294.278