Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03280 ATGAAAAGGTTTTCAATAATTGTATTTTTGAAGGTTGATAATAAAGTTGGCGAGAAAGTTAACGGTGAATCTATTGCACCAGGAACTGTTGCTTCCACTGATGTTGTAGCTACTATTATAGTTTCAAACTGTGGTAATTCCAGAGTGGTTTTGTGCTGTGTTAAGGAACCAATGCCTTTATCTGTGGATTATAAACCAAATCTAGATGATGAATATGCAAGGATCAAGGTAAGCCAACACATACATCATCATCCATTCAAATTAAAAAAGTACGATAAAGAAGAACAAGTCAGGACTAATTTGACTCGAGAGGTGCATGGGTATATCCAGATTCAAGCAAGTACATACTGA 351 0.3561 MKRFSIIVFLKVDNKVGEKVNGESIAPGTVASTDVVATIIVSNCGNSRVVLCCVKEPMPLSVDYKPNLDDEYARIKVSQHIHHHPFKLKKYDKEEQVRTNLTREVHGYIQIQASTY 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03280 116 Gene3D - 4 107 IPR036457 -
Vifa5g03280 116 Pfam Protein phosphatase 2C 21 76 IPR001932 -
Vifa5g03280 116 SUPERFAMILY PP2C-like 8 88 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03280 Vifa-Chr5 1082135359 1082135709 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03280 9 76 PP2C-type Phosphatase Gene Family AT1G17550 50.000 1.63e-16 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03280 K14497 - gmx:100791754 91.6633