Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03272 ATGAATCGCTTATCGATTATGATAGATGCTTGTAAGGCCGTTAGAGTGTTAGAAAACCAAAAAAATCACAAAGACAAACCAGTTCGCCGCAAGGAAGAAAAACCGGAAGAACCAGAATTGCCGAAATACAGAGATCGAGCTAAGGAACGTAGAGAAGATCAAAATCCGGATTATGAACAAACTGAACTTGGGTTTCATGCTGTTGCTCCTCCTGGTACCGTTGATATTACGTCATCTGATGCGTATAAGTTATCGATTGAGAAGAGCAAGTACCTTGGAGGTGATGTGGAGCATACATATTTGGTTAAAGGTTTAGATTATGCTTTACTGAACAAAGTAAGGAGTGAAATTAAGAAGCCAGATCTGAGGAAAAAGGTTTTGCCTGCTGTCATCGTTCGTCAACGTAAGCCATGGCGCCGAAAGGACGGTGTCTTCAAGTACTTTGAAGATAACGCTGGTGTCATTGTGAATCCTAAGGGAGAAATGAAAGGTTCTGCTATTACTGGTCCTATTGGTAAGGAGTGTGCTGATCTATGGCCTAGAATCGCAAGTGCTGCCAATGCCATTGTTTGA 573 0.4188 MNRLSIMIDACKAVRVLENQKNHKDKPVRRKEEKPEEPELPKYRDRAKERREDQNPDYEQTELGFHAVAPPGTVDITSSDAYKLSIEKSKYLGGDVEHTYLVKGLDYALLNKVRSEIKKPDLRKKVLPAVIVRQRKPWRRKDGVFKYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03272 190 PANTHER RED PROTEIN IK FACTOR CYTOKINE IK 20 119 IPR039896 -
Vifa5g03272 190 ProSitePatterns Ribosomal protein L14 signature. 129 155 IPR019972 -
Vifa5g03272 190 SMART Ribosomal_L14_2 94 190 IPR000218 GO:0003735|GO:0005840|GO:0006412
Vifa5g03272 190 Pfam RED-like protein N-terminal region 21 121 IPR012916 -
Vifa5g03272 190 MobiDBLite consensus disorder prediction 19 61 - -
Vifa5g03272 190 SUPERFAMILY Ribosomal protein L14 119 190 IPR036853 GO:0003735|GO:0005840|GO:0006412
Vifa5g03272 190 Pfam Ribosomal protein L14p/L23e 113 190 IPR000218 GO:0003735|GO:0005840|GO:0006412
Vifa5g03272 190 MobiDBLite consensus disorder prediction 19 59 - -
Vifa5g03272 190 Gene3D Ribosomal protein L14 98 190 IPR036853 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03272 Vifa-Chr5 1080403631 1080404414 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03272 119 190 Cytoplasmic Ribosomal Protein Gene Family AT3G04400 98.611 2.03e-47 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03272 K13109 - gmx:100775354 178.333