Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03263 ATGTCTATACAAGAAACGACTTCGTTATGGTGGACTACTCACCAACATCAACAACAAAGACAAGAGAAGACGAAGAGTCATCAACAAGAAGAAGAAGGTGAGTTAGAAGACGACGTCGTTTTAGAGTCAATGATGAAACTGAAAACGGCTTCAACGTCGGTGTCCGCGTCGGTGTCGGTATTGGAAGAAGAGAAAGAAGCTATGTTTGAGAAACCGTTAACACCAAGCGACGTTGGGAAGCTGAACCGTCTCGTGATACCGAAGCAACACGCGGAGAGATATTTCCCACTCGACTCAGAGGAAACGAAGGGACTTCTACTGAGTTTCGACGACGAGTCAGGGAAGTGTTGGAGGTTCCGTTATTCGTACTGGAACAGTAGCCAGAGTTACGTTCTTACCAAAGGTTGGAGTCGTTATGTGAAAGATAAACGTCTTGATGCCGGCGACGTCGTTTTGTTTCACAGACACCGTACACATCCTCACCGCTTTTTTATCTCTTGGAGGCGCCGCCATGCTAGTACGGACGGGAATGGTGCTGTTGTTCCTGTTGGGTGGTCCAGAGGGCTCTATCCTGCGCATCATCCTTATCCTACGCATCATCACCCTTTCTCATACCATACCGCAGGCGAAGGGTCCCAAAGTCAGAACACAAACGCACCTTGTGGAAACAATTCGAGTACTTCCAGGGTGCTGAGGCTGTTTGGAGTGAACATGGAATGCCAACCTGATAATAATATTAGTGATTCCGAAGCAGCAGAATGCTCTTATAATATGTCACAAGGATCACAATTCTACCACCACCTCCACCGTCAACCACCGTCAAACACTCACCATCACATGCTACGTCAACAACAACCATAG 861 0.4739 MSIQETTSLWWTTHQHQQQRQEKTKSHQQEEEGELEDDVVLESMMKLKTASTSVSASVSVLEEEKEAMFEKPLTPSDVGKLNRLVIPKQHAERYFPLDSEETKGLLLSFDDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFHRHRTHPHRFFISWRRRHASTDGNGAVVPVGWSRGLYPAHHPYPTHHHPFSYHTAGEGSQSQNTNAPCGNNSSTSRVLRLFGVNMECQPDNNISDSEAAECSYNMSQGSQFYHHLHRQPPSNTHHHMLRQQQP 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03263 286 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 14 251 IPR044800 GO:0003700
Vifa5g03263 286 Gene3D - 63 177 IPR015300 -
Vifa5g03263 286 SMART B3_2 69 171 IPR003340 GO:0003677
Vifa5g03263 286 MobiDBLite consensus disorder prediction 1 17 - -
Vifa5g03263 286 FunFam B3 domain-containing protein 62 179 - -
Vifa5g03263 286 ProSiteProfiles B3 DNA-binding domain profile. 69 171 IPR003340 GO:0003677
Vifa5g03263 286 MobiDBLite consensus disorder prediction 266 286 - -
Vifa5g03263 286 Pfam B3 DNA binding domain 69 170 IPR003340 GO:0003677
Vifa5g03263 286 CDD B3_DNA 68 158 IPR003340 GO:0003677
Vifa5g03263 286 MobiDBLite consensus disorder prediction 1 34 - -
Vifa5g03263 286 MobiDBLite consensus disorder prediction 18 32 - -
Vifa5g03263 286 SUPERFAMILY DNA-binding pseudobarrel domain 66 170 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03263 Vifa-Chr5 1077808259 1077809506 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03263 62 255 RAV Transcription Factor Family AT5G06250 49.767 9.04e-67 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vifa5g03263 B3 4.5e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03263 K09287 - gmx:100781153 276.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03263 5 1077808259 1077809506 Vifa5g03263 5 1077808259 1077809506 ECH