Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa5g03263 | ATGTCTATACAAGAAACGACTTCGTTATGGTGGACTACTCACCAACATCAACAACAAAGACAAGAGAAGACGAAGAGTCATCAACAAGAAGAAGAAGGTGAGTTAGAAGACGACGTCGTTTTAGAGTCAATGATGAAACTGAAAACGGCTTCAACGTCGGTGTCCGCGTCGGTGTCGGTATTGGAAGAAGAGAAAGAAGCTATGTTTGAGAAACCGTTAACACCAAGCGACGTTGGGAAGCTGAACCGTCTCGTGATACCGAAGCAACACGCGGAGAGATATTTCCCACTCGACTCAGAGGAAACGAAGGGACTTCTACTGAGTTTCGACGACGAGTCAGGGAAGTGTTGGAGGTTCCGTTATTCGTACTGGAACAGTAGCCAGAGTTACGTTCTTACCAAAGGTTGGAGTCGTTATGTGAAAGATAAACGTCTTGATGCCGGCGACGTCGTTTTGTTTCACAGACACCGTACACATCCTCACCGCTTTTTTATCTCTTGGAGGCGCCGCCATGCTAGTACGGACGGGAATGGTGCTGTTGTTCCTGTTGGGTGGTCCAGAGGGCTCTATCCTGCGCATCATCCTTATCCTACGCATCATCACCCTTTCTCATACCATACCGCAGGCGAAGGGTCCCAAAGTCAGAACACAAACGCACCTTGTGGAAACAATTCGAGTACTTCCAGGGTGCTGAGGCTGTTTGGAGTGAACATGGAATGCCAACCTGATAATAATATTAGTGATTCCGAAGCAGCAGAATGCTCTTATAATATGTCACAAGGATCACAATTCTACCACCACCTCCACCGTCAACCACCGTCAAACACTCACCATCACATGCTACGTCAACAACAACCATAG | 861 | 0.4739 | MSIQETTSLWWTTHQHQQQRQEKTKSHQQEEEGELEDDVVLESMMKLKTASTSVSASVSVLEEEKEAMFEKPLTPSDVGKLNRLVIPKQHAERYFPLDSEETKGLLLSFDDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFHRHRTHPHRFFISWRRRHASTDGNGAVVPVGWSRGLYPAHHPYPTHHHPFSYHTAGEGSQSQNTNAPCGNNSSTSRVLRLFGVNMECQPDNNISDSEAAECSYNMSQGSQFYHHLHRQPPSNTHHHMLRQQQP | 286 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa5g03263 | 286 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 14 | 251 | IPR044800 | GO:0003700 | |
Vifa5g03263 | 286 | Gene3D | - | 63 | 177 | IPR015300 | - | |
Vifa5g03263 | 286 | SMART | B3_2 | 69 | 171 | IPR003340 | GO:0003677 | |
Vifa5g03263 | 286 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
Vifa5g03263 | 286 | FunFam | B3 domain-containing protein | 62 | 179 | - | - | |
Vifa5g03263 | 286 | ProSiteProfiles | B3 DNA-binding domain profile. | 69 | 171 | IPR003340 | GO:0003677 | |
Vifa5g03263 | 286 | MobiDBLite | consensus disorder prediction | 266 | 286 | - | - | |
Vifa5g03263 | 286 | Pfam | B3 DNA binding domain | 69 | 170 | IPR003340 | GO:0003677 | |
Vifa5g03263 | 286 | CDD | B3_DNA | 68 | 158 | IPR003340 | GO:0003677 | |
Vifa5g03263 | 286 | MobiDBLite | consensus disorder prediction | 1 | 34 | - | - | |
Vifa5g03263 | 286 | MobiDBLite | consensus disorder prediction | 18 | 32 | - | - | |
Vifa5g03263 | 286 | SUPERFAMILY | DNA-binding pseudobarrel domain | 66 | 170 | IPR015300 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa5g03263 | Vifa-Chr5 | 1077808259 | 1077809506 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa5g03263 | 62 | 255 | RAV Transcription Factor Family | AT5G06250 | 49.767 | 9.04e-67 | 207 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | B3 | Vifa5g03263 | B3 | 4.5e-29 | CL0405 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa5g03263 | K09287 | - | gmx:100781153 | 276.559 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vifa5g03263 | 5 | 1077808259 | 1077809506 | Vifa5g03263 | 5 | 1077808259 | 1077809506 | ECH |