LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa5g03257	ATGACAATCGTTGGATATGGCGATCTCGTTCCTAATAGTACTATAGCGAAACTACTTGCTTTCCTTTATGTCTTCACTGGTATGGCTCTTGGTGGCTTGATTCTTAGCAAAGCAGCAGATTACATTGTTGAAAAACAGGAAGTGTATCTTGTTAAAGCAATATGTAAAGCCGAGAAACTCGGTCTAGAAGGGGTTTCTAAAGAACTTGTGACTAAGAAAAGCAAATACAAGTTTCTGCTTTCAATATCCACTTTTGTTGTACTCATGATTACAGGAACTATTTTTCTGTATTTTGTTGAGAAACTAGATTTCGTCGATGCATTCTATTGTGTTTGTTCGATGGTTACGACTTTAGGTTACGAAGATAAGAGCTTCTCAACTCCTATTGGTAGGACTTTTGCTGTGTTTTGGATATTAAGCAGCACCATTTGCTTGGCTCAGTGTTTTGCATATCTTACTGATTTTTATACGGAAGATAGACAAAGATCATTGGCGAAAATGGTTCTCACGCGAAATTTTTATATGCATCATTCACTGGGATTGTATACTTTTCTTAATTTGTCGCGTATAATCGACGACAACAACAACACCAACACAGACATGTCTATAGCAGCGACCTCCTCACAAAATCATCAATTGTAA	642	0.3707	MTIVGYGDLVPNSTIAKLLAFLYVFTGMALGGLILSKAADYIVEKQEVYLVKAICKAEKLGLEGVSKELVTKKSKYKFLLSISTFVVLMITGTIFLYFVEKLDFVDAFYCVCSMVTTLGYEDKSFSTPIGRTFAVFWILSSTICLAQCFAYLTDFYTEDRQRSLAKMVLTRNFYMHHSLGLYTFLNLSRIIDDNNNTNTDMSIAATSSQNHQL	213

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa5g03257	213	SUPERFAMILY	Voltage-gated potassium channels	71	181	-	-
	Vifa5g03257	213	Pfam	Ion channel	2	43	IPR013099	-
	Vifa5g03257	213	Pfam	Ion channel	85	157	IPR013099	-
	Vifa5g03257	213	Gene3D	-	60	163	-	-
	Vifa5g03257	213	Gene3D	-	1	52	-	-
	Vifa5g03257	213	SUPERFAMILY	Voltage-gated potassium channels	1	47	-	-
	Vifa5g03257	213	PANTHER	POTASSIUM CHANNEL, SUBFAMILY K	1	172	IPR003280	GO:0005267\|GO:0016020\|GO:0071805

Showing 1 to 7 of 7 entries

Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa5g03257	Vifa-Chr5	1077201629	1077202270	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa5g03257	1	172	Ion Channels	AT5G55630	57.558	6.21e-62	195

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa5g03257	K05389		-	gmx:100799492	254.988

Showing 1 to 1 of 1 entries