Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03257 ATGACAATCGTTGGATATGGCGATCTCGTTCCTAATAGTACTATAGCGAAACTACTTGCTTTCCTTTATGTCTTCACTGGTATGGCTCTTGGTGGCTTGATTCTTAGCAAAGCAGCAGATTACATTGTTGAAAAACAGGAAGTGTATCTTGTTAAAGCAATATGTAAAGCCGAGAAACTCGGTCTAGAAGGGGTTTCTAAAGAACTTGTGACTAAGAAAAGCAAATACAAGTTTCTGCTTTCAATATCCACTTTTGTTGTACTCATGATTACAGGAACTATTTTTCTGTATTTTGTTGAGAAACTAGATTTCGTCGATGCATTCTATTGTGTTTGTTCGATGGTTACGACTTTAGGTTACGAAGATAAGAGCTTCTCAACTCCTATTGGTAGGACTTTTGCTGTGTTTTGGATATTAAGCAGCACCATTTGCTTGGCTCAGTGTTTTGCATATCTTACTGATTTTTATACGGAAGATAGACAAAGATCATTGGCGAAAATGGTTCTCACGCGAAATTTTTATATGCATCATTCACTGGGATTGTATACTTTTCTTAATTTGTCGCGTATAATCGACGACAACAACAACACCAACACAGACATGTCTATAGCAGCGACCTCCTCACAAAATCATCAATTGTAA 642 0.3707 MTIVGYGDLVPNSTIAKLLAFLYVFTGMALGGLILSKAADYIVEKQEVYLVKAICKAEKLGLEGVSKELVTKKSKYKFLLSISTFVVLMITGTIFLYFVEKLDFVDAFYCVCSMVTTLGYEDKSFSTPIGRTFAVFWILSSTICLAQCFAYLTDFYTEDRQRSLAKMVLTRNFYMHHSLGLYTFLNLSRIIDDNNNTNTDMSIAATSSQNHQL 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03257 213 SUPERFAMILY Voltage-gated potassium channels 71 181 - -
Vifa5g03257 213 Pfam Ion channel 2 43 IPR013099 -
Vifa5g03257 213 Pfam Ion channel 85 157 IPR013099 -
Vifa5g03257 213 Gene3D - 60 163 - -
Vifa5g03257 213 Gene3D - 1 52 - -
Vifa5g03257 213 SUPERFAMILY Voltage-gated potassium channels 1 47 - -
Vifa5g03257 213 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 1 172 IPR003280 GO:0005267|GO:0016020|GO:0071805
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03257 Vifa-Chr5 1077201629 1077202270 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03257 1 172 Ion Channels AT5G55630 57.558 6.21e-62 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03257 K05389 - gmx:100799492 254.988