Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03256 ATGGCAGCCATCAGAAGAATCGTCGGCTACAACAATTCCGTATCTCCCTTTCTTCTCACTTTCCACAGAGCAGTTTCCTTCAAGCTTTTCATTGGAGGACTCTCCTTTCACTCAACAGAGAAAACATTGTCAGAAGCATTTTCAAATTATGGACAAGTTATTGAAGCTAAAGTTGTGACTGATAGGGTGTCAGAGAAATCTAAAGGGTATGGTTTTGTTACTTTTGCTTCACAAGATGAAGCTGAGAATGCCATAGCTGAGATGAATGAAAAGGCACTAAACGGACGTGTTGTCTTCGTTGATTATGCAAAACCGGATACTAAACGCAGTATGGGAATGCCAATTGCAAGAGGGCCTCCTGAAGTTCTAAACAAACAAGAGATAGTTGATTCTCCTCAAGAGACATGA 408 0.4093 MAAIRRIVGYNNSVSPFLLTFHRAVSFKLFIGGLSFHSTEKTLSEAFSNYGQVIEAKVVTDRVSEKSKGYGFVTFASQDEAENAIAEMNEKALNGRVVFVDYAKPDTKRSMGMPIARGPPEVLNKQEIVDSPQET 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03256 135 SMART rrm1_1 28 101 IPR000504 GO:0003723
Vifa5g03256 135 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 27 105 IPR000504 GO:0003723
Vifa5g03256 135 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 29 98 IPR000504 GO:0003723
Vifa5g03256 135 Gene3D - 22 112 IPR012677 -
Vifa5g03256 135 MobiDBLite consensus disorder prediction 110 135 - -
Vifa5g03256 135 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 25 112 - -
Vifa5g03256 135 SUPERFAMILY RNA-binding domain, RBD 26 118 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03256 Vifa-Chr5 1076883704 1076884653 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03256 14 111 Eukaryotic Initiation Factors Gene Family AT2G23350 26.923 7.37e-06 42.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03256 - - lja:Lj1g3v4721740.1 205.682