Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03251 ATGTTTGATGGAAATTGGTTCCCAGATTTCACCTGGGAACACGTATCAAGGAAGCTAGCTGAGATTGGATTTAAACGTAGTGCAGAGAAATGCAAAGAGAAATTTGAAGAAGAAAGTAGATTTTTCAGCAACATTAGTAATAATAATAATAATCAGAATCCGAATCAGAATCAGAATAATTACGGTAAGAATTTTCGGTTTGTTACTGAGCTTGAAGAGCTTTATCAAGGTGGTGGGGGTGAGAATAAGCAAGACAAGATGAGGAGTGAATCGAATGACGATGATTCGAGAAGCGACGAGGTTTTGGTGATGAAGAAAGATGAAGATGAGGTGTTTGAGAGAAGTACTAGAAATGATGAGAAGAAGAGGAAAAGAGGTGGTGATAGATTTGAAGTGTTCAAGGGTTTTTGTGAGAGTGTTGTGAAGAAAATGATGGATCAACAAGAAGAGATGCATAACAAGCTTATTGAGGATATGATTAAAAGAGATGAAGAGAAGTATACGATACCTCGAATCAGAAAACGTCTTCTTGTTGATGTGTTTTCTTCAACCTAA 555 0.3676 MFDGNWFPDFTWEHVSRKLAEIGFKRSAEKCKEKFEEESRFFSNISNNNNNQNPNQNQNNYGKNFRFVTELEELYQGGGGENKQDKMRSESNDDDSRSDEVLVMKKDEDEVFERSTRNDEKKRKRGGDRFEVFKGFCESVVKKMMDQQEEMHNKLIEDMIKRDEEKYTIPRIRKRLLVDVFSST 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03251 184 PANTHER FI21293P1 10 167 - -
Vifa5g03251 184 MobiDBLite consensus disorder prediction 77 125 - -
Vifa5g03251 184 MobiDBLite consensus disorder prediction 83 125 - -
Vifa5g03251 184 Gene3D - 8 44 - -
Vifa5g03251 184 Pfam Myb/SANT-like DNA-binding domain 11 57 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03251 Vifa-Chr5 1074699255 1074704142 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03251 12 42 Trihelix Transcription Factor Family AT5G28300 54.839 2.58e-06 45.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vifa5g03251 Myb_DNA-bind_4 2.2e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03251 - - tpra:123903108 202.601