Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03250 ATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATAACCCTCGAGGTTGAGTCTTCCGACACCATCGACAACGTCAAGACCAAGATCCAAGACAAGGAGGGGATTCCTCCAGATCAGCAGCGTCTCATCTTCGCCGGGAAGCAGTTGGAAGACGGCCGCACTCTCGCCGACTACAACATCCAGAAGGAGTCAACTCTCCACCTCGTCCTCCGTCTCCGCGGTGGCGCGAAGAAGCGTAAGAAGAAGACCTATACCAAGCCGAAGAAGATCAAGCATAAGCACAGGAAGGTGAAGCTTGCGGTTCTCCAGTTTTACAAGGTGGATGATTCCGGAAAGGTGCAGAGGCTGAGGAAGGAGTGTCCTAATGCTGAGTGTGGTGCCGGGACTTTCATGGCGAATCATTTCGATCGTCATTATTGTGGTAAGTGCGGGCTTACCTATGTTTACCAGAAGGCTGAAGCATGA 468 0.5214 MQIFVKTLTGKTITLEVESSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHRKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKAEA 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03250 155 FunFam Ubiquitin-40S ribosomal protein S27a 1 79 - -
Vifa5g03250 155 Gene3D - 81 155 IPR038582 -
Vifa5g03250 155 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Vifa5g03250 155 SUPERFAMILY Zn-binding ribosomal proteins 100 153 IPR011332 GO:0006412
Vifa5g03250 155 Pfam Ribosomal protein S27a 102 147 IPR002906 GO:0003735|GO:0005840|GO:0006412
Vifa5g03250 155 PRINTS Ubiquitin signature 53 74 IPR019956 -
Vifa5g03250 155 PRINTS Ubiquitin signature 32 52 IPR019956 -
Vifa5g03250 155 PRINTS Ubiquitin signature 11 31 IPR019956 -
Vifa5g03250 155 PANTHER UBIQUITIN 1 89 - -
Vifa5g03250 155 SMART Ribosomal_S27_2 102 147 IPR002906 GO:0003735|GO:0005840|GO:0006412
Vifa5g03250 155 SMART ubq_7 1 72 IPR000626 GO:0005515
Vifa5g03250 155 SUPERFAMILY Ubiquitin-like 1 93 IPR029071 -
Vifa5g03250 155 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Vifa5g03250 155 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Vifa5g03250 155 CDD Ubl_ubiquitin 1 76 - -
Vifa5g03250 155 Gene3D - 1 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03250 Vifa-Chr5 1074696694 1074697161 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03250 1 154 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 90.909 2.22e-91 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03250 K02977 - atri:130823869 282.722