Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03247 ATGGAAAATATGCCACCAGGTTATCGTTTCTACCCGACAGAAGAAGAGTTAATTTCTTTCTATCTTCATAATATGCTCGAAGGAAAGAAACAATGCATCATTCGAAGTGTTATACCGGTCGTTAATATATACGACTATAATCCATCACAACTCCCACAAATTTCTGGAGAGGCTAGTATGAGAGACACGGAGCAATGGTTCTTTTTTATTCCGAGGCAAGAGAGTGAAGTGAGAGGAGGAAGGCCAAAGCGTCTTACAACAACTGGTTACTGGAAAGCCACTGGTTCTCCTAGTCATGTTTATTCCTCTGATAATGGCGTAATTGGTATGAAAAGGACTATGGTTTTTTATTGTGGAAGAGCTCCAAATGGAAGGAAGACCGATTGGAAAATGAATGAGTATAAGGCCATTCAAGATGAATCAGGTCCTAAGTTAAGGCAAGAATTTAGTTTAAGTCGAGTGTACAAGAAATCAAAGTGTTTGAGGGCATTTGATAGACGACCACTACCAAGGAGGGTTACACCATGTGTTAAATATGTTCAAGAGCACATGATGAATTCAACTTGCGATCATGATGTTCAGGTAATGATGGAGATAAGTCCAACAAGCTCACCAGAATGCTCTTCTTCTGTAGATCATGGCCAGCCCTCACAGGAGGTTGGAGAAGGTAGCCAAATGGATATTAATGTTGACTATGAGCCTTTGTTGGATTGGGAACAAGTGGATTGGTTCTTGGGATCAGAGCCATGA 750 0.408 MENMPPGYRFYPTEEELISFYLHNMLEGKKQCIIRSVIPVVNIYDYNPSQLPQISGEASMRDTEQWFFFIPRQESEVRGGRPKRLTTTGYWKATGSPSHVYSSDNGVIGMKRTMVFYCGRAPNGRKTDWKMNEYKAIQDESGPKLRQEFSLSRVYKKSKCLRAFDRRPLPRRVTPCVKYVQEHMMNSTCDHDVQVMMEISPTSSPECSSSVDHGQPSQEVGEGSQMDINVDYEPLLDWEQVDWFLGSEP 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03247 249 Gene3D NAC domain 13 161 IPR036093 GO:0003677|GO:0006355
Vifa5g03247 249 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 191 - -
Vifa5g03247 249 SUPERFAMILY NAC domain 2 157 IPR036093 GO:0003677|GO:0006355
Vifa5g03247 249 Pfam No apical meristem (NAM) protein 5 135 IPR003441 GO:0003677|GO:0006355
Vifa5g03247 249 MobiDBLite consensus disorder prediction 201 222 - -
Vifa5g03247 249 ProSiteProfiles NAC domain profile. 4 157 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03247 Vifa-Chr5 1073918779 1073919758 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03247 7 243 NAC Transcription Factor Family AT5G22380 48.780 9.59e-73 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa5g03247 NAM 2.7e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03247 - - psat:127125619 470.7