LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa5g03235	ATGAACGAGAAAGCCAACGTTTCTAAGGAGCTCAACGCCAAGCACAAAAGGATACTAGAAGGACTTCTTAAATTACCAGAGAATAGGGAGTGTGCTGACTGCGAAGCTAAAGGACCAAGATGGGCTAGTGTCAATCTTGGCATCTTTATTTGCATGCAGTGTTCAGGAATACAACGAAGTCTTGGGGTACACATTTCAAAGGTTCGCTCTGCTACTTTAGACACTTATCTCCCAGAGCAGGTTGCATTTATTCAATCTATGGGAAATGAGAAAGCAAATAGTTATTGGGAAGCAGAATTACCTCCAGATTATGACAGAGTTGGTATTGAAAACTTCATCCGTGCAAAGTATGAAGACAAGAGATGGGTTGCAAGGGACACTAAGCCAAAATCACCTTCTAGACTGGTAGAAGAGAAAAGTCATTCACAATGGCAAAAACCTGTTGAAAGAGTTGGGCATAATTATGTTGCAGAGAATACTTTTGAAGAAAAGAGGACATTTACTGGACCCATTTCCATCTTTGATGGAAACAGTTTCTGTGAGAAGGCAGCTTCTTATTTTGTTGGAAAATGCGGACCTGCTCAAACTGAACAAGGTGGTAGCAAGGCAAAGGACAACATCAATTCTGTTGAAGAAGTCAATACTGCTTCTAATGGGGGTGTTACTGTTGAGTGTGGTTCATCTGAGAAACTTCGGCATCTTAAGAAAGTAGGAGCACCATTAGCTGTACCTTTTGAAACTGCCAACGGAAAGACTTCCAATGCTGGCGTAAGAACTGATTCCCCTGAGCTGTTCGCGGCGGATGCATCCACTAAGACCACACCTGTAGTAGTTCCCTTCCAATCAGCTGGAAAAAGGCCCAAGAAGCCTGTTAATGAAGTTACGCCTGTCGTCCATACTAAGAAGCGAGGAAGACCACCTAAAGTAGATAGTTCTTCCGAGACAATACGTGATTTGGTGGCTTATAGCAGGGAACACTCAGGGTTGTCCTGTACAGGAGCAGAGAACAACATACCAATAGATCCTCAGTACTATCTTGAGAATCAAATTAGCAAGCCAATTCTAAGAATTTTTGAGCCAATTCTAAAGAATGCCAGCAAGGAACTTCTCCATGGAAGTCACACGAGATCTATTTCTATTTCTACTCCGTCTAGCAGCGGTATAATGAAATTTGCCAAGAAACAGTTTACTTGCATTGGTTGCAAAGCTTTACTTAGCAATGGAGACCGCACTCTCTGCTCTCATTGCAAAGGAAGGGAAGCTGAACTGTACTGTAAAACCGTAGCTCAAGTGTCGGATCTTGAGATACTTTTTTGGGAGGTTGTGGACACAGTGTCAGGAGTGCCAAGGTTCACTTTATCAGGATGTTCTCTGCACAACTCGAGATTGTCCAATTTTTTTTATCGATGCAAGAAGGCACAGAAAGACATGGCTGAAGCAAGGGTGCAATTGGACAGATGGAACTTCTAA	1470	0.4265	MNEKANVSKELNAKHKRILEGLLKLPENRECADCEAKGPRWASVNLGIFICMQCSGIQRSLGVHISKVRSATLDTYLPEQVAFIQSMGNEKANSYWEAELPPDYDRVGIENFIRAKYEDKRWVARDTKPKSPSRLVEEKSHSQWQKPVERVGHNYVAENTFEEKRTFTGPISIFDGNSFCEKAASYFVGKCGPAQTEQGGSKAKDNINSVEEVNTASNGGVTVECGSSEKLRHLKKVGAPLAVPFETANGKTSNAGVRTDSPELFAADASTKTTPVVVPFQSAGKRPKKPVNEVTPVVHTKKRGRPPKVDSSSETIRDLVAYSREHSGLSCTGAENNIPIDPQYYLENQISKPILRIFEPILKNASKELLHGSHTRSISISTPSSSGIMKFAKKQFTCIGCKALLSNGDRTLCSHCKGREAELYCKTVAQVSDLEILFWEVVDTVSGVPRFTLSGCSLHNSRLSNFFYRCKKAQKDMAEARVQLDRWNF	489

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa5g03235	489	CDD	ArfGap	19	117	-	-
	Vifa5g03235	489	Gene3D	Arf GTPase activating protein	1	130	IPR038508	-
	Vifa5g03235	489	SMART	arf_gap_3	16	130	IPR001164	GO:0005096
	Vifa5g03235	489	PANTHER	ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5	1	170	IPR044520	GO:0005096
	Vifa5g03235	489	SUPERFAMILY	ArfGap/RecO-like zinc finger	15	124	IPR037278	-
	Vifa5g03235	489	PRINTS	HIV Rev interacting protein signature	47	64	IPR001164	GO:0005096
	Vifa5g03235	489	PRINTS	HIV Rev interacting protein signature	68	89	IPR001164	GO:0005096
	Vifa5g03235	489	PRINTS	HIV Rev interacting protein signature	28	47	IPR001164	GO:0005096
	Vifa5g03235	489	Pfam	Putative GTPase activating protein for Arf	17	125	IPR001164	GO:0005096
	Vifa5g03235	489	Gene3D	-	321	371	IPR042087	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa5g03235	Vifa-Chr5	1071916191	1071917970	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa5g03235	335	489	Core DNA Replication Machinery Family	AT5G63960	67.089	8.23e-59	207

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa5g03235	K12486		-	gmx:100807561	300.827

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