Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03235 ATGAACGAGAAAGCCAACGTTTCTAAGGAGCTCAACGCCAAGCACAAAAGGATACTAGAAGGACTTCTTAAATTACCAGAGAATAGGGAGTGTGCTGACTGCGAAGCTAAAGGACCAAGATGGGCTAGTGTCAATCTTGGCATCTTTATTTGCATGCAGTGTTCAGGAATACAACGAAGTCTTGGGGTACACATTTCAAAGGTTCGCTCTGCTACTTTAGACACTTATCTCCCAGAGCAGGTTGCATTTATTCAATCTATGGGAAATGAGAAAGCAAATAGTTATTGGGAAGCAGAATTACCTCCAGATTATGACAGAGTTGGTATTGAAAACTTCATCCGTGCAAAGTATGAAGACAAGAGATGGGTTGCAAGGGACACTAAGCCAAAATCACCTTCTAGACTGGTAGAAGAGAAAAGTCATTCACAATGGCAAAAACCTGTTGAAAGAGTTGGGCATAATTATGTTGCAGAGAATACTTTTGAAGAAAAGAGGACATTTACTGGACCCATTTCCATCTTTGATGGAAACAGTTTCTGTGAGAAGGCAGCTTCTTATTTTGTTGGAAAATGCGGACCTGCTCAAACTGAACAAGGTGGTAGCAAGGCAAAGGACAACATCAATTCTGTTGAAGAAGTCAATACTGCTTCTAATGGGGGTGTTACTGTTGAGTGTGGTTCATCTGAGAAACTTCGGCATCTTAAGAAAGTAGGAGCACCATTAGCTGTACCTTTTGAAACTGCCAACGGAAAGACTTCCAATGCTGGCGTAAGAACTGATTCCCCTGAGCTGTTCGCGGCGGATGCATCCACTAAGACCACACCTGTAGTAGTTCCCTTCCAATCAGCTGGAAAAAGGCCCAAGAAGCCTGTTAATGAAGTTACGCCTGTCGTCCATACTAAGAAGCGAGGAAGACCACCTAAAGTAGATAGTTCTTCCGAGACAATACGTGATTTGGTGGCTTATAGCAGGGAACACTCAGGGTTGTCCTGTACAGGAGCAGAGAACAACATACCAATAGATCCTCAGTACTATCTTGAGAATCAAATTAGCAAGCCAATTCTAAGAATTTTTGAGCCAATTCTAAAGAATGCCAGCAAGGAACTTCTCCATGGAAGTCACACGAGATCTATTTCTATTTCTACTCCGTCTAGCAGCGGTATAATGAAATTTGCCAAGAAACAGTTTACTTGCATTGGTTGCAAAGCTTTACTTAGCAATGGAGACCGCACTCTCTGCTCTCATTGCAAAGGAAGGGAAGCTGAACTGTACTGTAAAACCGTAGCTCAAGTGTCGGATCTTGAGATACTTTTTTGGGAGGTTGTGGACACAGTGTCAGGAGTGCCAAGGTTCACTTTATCAGGATGTTCTCTGCACAACTCGAGATTGTCCAATTTTTTTTATCGATGCAAGAAGGCACAGAAAGACATGGCTGAAGCAAGGGTGCAATTGGACAGATGGAACTTCTAA 1470 0.4265 MNEKANVSKELNAKHKRILEGLLKLPENRECADCEAKGPRWASVNLGIFICMQCSGIQRSLGVHISKVRSATLDTYLPEQVAFIQSMGNEKANSYWEAELPPDYDRVGIENFIRAKYEDKRWVARDTKPKSPSRLVEEKSHSQWQKPVERVGHNYVAENTFEEKRTFTGPISIFDGNSFCEKAASYFVGKCGPAQTEQGGSKAKDNINSVEEVNTASNGGVTVECGSSEKLRHLKKVGAPLAVPFETANGKTSNAGVRTDSPELFAADASTKTTPVVVPFQSAGKRPKKPVNEVTPVVHTKKRGRPPKVDSSSETIRDLVAYSREHSGLSCTGAENNIPIDPQYYLENQISKPILRIFEPILKNASKELLHGSHTRSISISTPSSSGIMKFAKKQFTCIGCKALLSNGDRTLCSHCKGREAELYCKTVAQVSDLEILFWEVVDTVSGVPRFTLSGCSLHNSRLSNFFYRCKKAQKDMAEARVQLDRWNF 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03235 489 CDD ArfGap 19 117 - -
Vifa5g03235 489 Gene3D Arf GTPase activating protein 1 130 IPR038508 -
Vifa5g03235 489 SMART arf_gap_3 16 130 IPR001164 GO:0005096
Vifa5g03235 489 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 170 IPR044520 GO:0005096
Vifa5g03235 489 SUPERFAMILY ArfGap/RecO-like zinc finger 15 124 IPR037278 -
Vifa5g03235 489 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Vifa5g03235 489 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Vifa5g03235 489 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Vifa5g03235 489 Pfam Putative GTPase activating protein for Arf 17 125 IPR001164 GO:0005096
Vifa5g03235 489 Gene3D - 321 371 IPR042087 -
Vifa5g03235 489 FunFam stromal membrane-associated protein 1 isoform X1 1 128 - -
Vifa5g03235 489 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 130 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03235 Vifa-Chr5 1071916191 1071917970 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03235 335 489 Core DNA Replication Machinery Family AT5G63960 67.089 8.23e-59 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03235 K12486 - gmx:100807561 300.827