Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03232 ATGATAGGAAAAAAGATTGTCTCAATCAAGAAACTAGCCAAAAAGGTGAAGCTTGTAGGTAGAGTTGACTCTGACCTTGCTCAATACGGGATGTTGAAGGAATTTGAAGAAGAAGATGAAGAAAAACACCCAATTGGCAAAAATATTGAGTCCAAAAAACGTGGTGTTTTTGCACTATATGTTGGGGAGGAACGAGAGAGATATGTGGTTCCAACTAGTTACCTTATTCATCCATTATTCAAGATGTTGTTGGAGAAAGCATACAATGAATTTGGATTTCAACAAAGGAATGGTTTGGTTGTTCCATGTAGTGTTTCTGCTTTTCGTGAAGTTGTTAATGCTATAGAATGTAACAATTGTAAGTTTGACATGGCAAATATTTGTGATGAATTGATTTGA 399 0.3534 MIGKKIVSIKKLAKKVKLVGRVDSDLAQYGMLKEFEEEDEEKHPIGKNIESKKRGVFALYVGEERERYVVPTSYLIHPLFKMLLEKAYNEFGFQQRNGLVVPCSVSAFREVVNAIECNNCKFDMANICDELI 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03232 132 Pfam Auxin responsive protein 50 114 IPR003676 GO:0009733
Vifa5g03232 132 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 44 111 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03232 Vifa-Chr5 1070737884 1070738282 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03232 54 118 Calmodulin-binding Proteins AT5G20810 50.769 1.25e-18 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03232 K14488 - gmx:100776885 142.124