Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03231 ATGTTAGGGATAAAGATTGTATCACTTAAGAAACTAGTAAAAAAGGTGAAGGTTGTAGGTAGAGTTGACCACGACCCAGCTCATTGTAACTTGTTGAAGGAATTTGAAGAAGAAAAAAAACATCCAATTGTGAAAAGAAGTGGTGTTTTTGCACTATATGTTGGAGAGGAACGACAGAGGTACGTCGTTCCAATTGGTTACCTTTGTCATCCTTTATTCAAGATGTTGTTGGAGAAAGCATACAATGAATTTGGGTTTCAACGGAGAAATGGTTTGGTAGTTCCATGTAGTGTTTCTACTTTTCGAGAAGTGGTTAATGCTATCGGATGTAACAATGGTAAGTTTAACATGGAAAATATTTTTGATGAATTGATTTGA 378 0.3545 MLGIKIVSLKKLVKKVKVVGRVDHDPAHCNLLKEFEEEKKHPIVKRSGVFALYVGEERQRYVVPIGYLCHPLFKMLLEKAYNEFGFQRRNGLVVPCSVSTFREVVNAIGCNNGKFNMENIFDELI 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03231 125 Pfam Auxin responsive protein 38 107 IPR003676 GO:0009733
Vifa5g03231 125 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 34 104 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03231 Vifa-Chr5 1070648057 1070648434 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03231 38 102 Calmodulin-binding Proteins AT5G20810 49.231 1.14e-16 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03231 K14488 - gmx:100790208 148.288