Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03230 ATGAATGTGGATTCACTAAGCCCTGCAGTCTTTGTCAATGCGGAACTGTTACCCTTTTGTGTTGGAAGAAGGGTTCGTACTGTGATACAAGTCGTGCGATCTGATGGTGTACTTGTCATTGGAAAATCACCCGATGAGAAGCAGATGATTGTTAAAATATCACCTGATTCACCCCTACCAACTCCTCATACGGGTTTTGTAGAAGTTATTGTTATTGTTAGCAGTGACAAGTCCATCAAAGCCGAATTATGGACCAACTTTGGTGATGAAATTGATATGTTCAGCTACCATAAGCTATGTCAGCTTGCAAATGGAGAATTCAAACACTTGTTCTTGTGA 339 0.4071 MNVDSLSPAVFVNAELLPFCVGRRVRTVIQVVRSDGVLVIGKSPDEKQMIVKISPDSPLPTPHTGFVEVIVIVSSDKSIKAELWTNFGDEIDMFSYHKLCQLANGEFKHLFL 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03230 112 PANTHER REPLICATION PROTEIN A 14 KDA SUBUNIT A-RELATED 2 112 - -
Vifa5g03230 112 SUPERFAMILY Nucleic acid-binding proteins 8 111 IPR012340 -
Vifa5g03230 112 Gene3D - 7 112 IPR012340 -
Vifa5g03230 112 Pfam Replication factor A protein 3 8 108 IPR013970 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vifa5g03230 112 CDD RPA3 8 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03230 Vifa-Chr5 1070481429 1070482755 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03230 3 112 Core DNA Replication Machinery Family AT4G18590 54.545 1.38e-39 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03230 K10740 - gmx:100306641 147.132