Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03225 ATGCATACAATGCCTGGGACAAGACAGAAAGAAGGAACAGCTCAAAATTCAGAGTCAACAGGGGGGAATGGTGATCCGGAAAAACCTACAGATTCTGGTGAGCAGATAGACCTTGAAGGGGATAATGATCAAGATGAGTCATCTGAGGAAGAGGTAGAGTATGAAGAAGTGGAGGTGGAGGAAGAAGTGGAAGTGGAAGAAGAGGAGGAGGAGGAGGAGGAAGAAGAGGAAGAAGAAGTAGAGGAAGGTAGTAAGCCTTCAGACGGGGAAGACGAGATGAGAGTGGATGATAGTATGGATGAGGTTGAGAAGAAGAGACATGCTGAACTTCTTGCGCTTCCACCTCATGGTTCAGAGGTCTACATTGGGGGAATTCCTCACGACGTTTCTGAAAAAGATTTAAGGGTCTTCTGTCTATCCGTGGGAGAAGTTGTAGAGGTAAGGATTATGAAGGGAAAAGAAGCAAAAGGTTATGCTTTTGTGACCTTCAAGACAAAGGAATTGGCATCAAAGGCTATCGAGGAGTTGAACAACACTGAATTCAAGGGAAACAAAATAAAGTGCTCAACGTCTCAAGTTAAGCATAGGTTATTCATTGGAAATGTTCCTAAAGAATGGACTGTTGAAGATATGAAGAAGGTTGTTGCCAAGGTTGGCCCTGGCGTCATTTCTGTGGAACTGTTGAAGGATCCACAGAGTTCTGGCCGTAATCGGGGATTTGCTTTTATTGAGTATCACAATCATGCTTGTGCAGAATATTCAAGGCAGAAAATGGCAAACTCCAAATTTAAACTTGACACTAATGCTCCAACAGTGAGCTGGGCTGACCCAAGGAATTCTGATTCATCAGCATCCTCTCAGGTGAAAGCAGTATATGTAAAGAACCTTCCAGAAAACATAACGCAGGATCGCCTGAAGGAGTTGTTTGAACATCATGGTAAGATCACAAAAGTGGCTCTCCCTCCTGCTAAAGCTGGACAAGAGAAGAGCAGATATGGTTTTGTGCACTTTGCTGATAGATCATGTGCAATGAAGGCATTGAAGAACACGGAGAAGTATGAGATTGATGGCCAAACTTTAGAATGCTCACTCGCTAAGCCACAGGCAGATCAGAAATCATCTGGTATATCAAATTCACACAAGTCACCTATACTTCCTACTTATCCACCCCCTCTTGGTTATAGCATGGTTGGAGGTGGATATGGGGCTGTTGGTGCAGGATATGGTGCCGCTGGCTTTGCACAGCCACTGATGTATGGTCCGGGAGCAACCCCTGCTGGCATGGCAATGATGCCAATACTTCTACCCGATGGAAGGATTGCATATGTCTTGCAACAGCCAGGTTTGCAACAGCCAGGTTTGCAACAGCATGCTCCTTCACCAGTAACTCGACATGGCAGGAGTGGTGGTGGTAGCTCAAGTGGTGAAAAACGTAATACCGATAATAACCGTAATCGTGGTCCTGGCCGATATAATCCATACTAA 1485 0.4498 MHTMPGTRQKEGTAQNSESTGGNGDPEKPTDSGEQIDLEGDNDQDESSEEEVEYEEVEVEEEVEVEEEEEEEEEEEEEEVEEGSKPSDGEDEMRVDDSMDEVEKKRHAELLALPPHGSEVYIGGIPHDVSEKDLRVFCLSVGEVVEVRIMKGKEAKGYAFVTFKTKELASKAIEELNNTEFKGNKIKCSTSQVKHRLFIGNVPKEWTVEDMKKVVAKVGPGVISVELLKDPQSSGRNRGFAFIEYHNHACAEYSRQKMANSKFKLDTNAPTVSWADPRNSDSSASSQVKAVYVKNLPENITQDRLKELFEHHGKITKVALPPAKAGQEKSRYGFVHFADRSCAMKALKNTEKYEIDGQTLECSLAKPQADQKSSGISNSHKSPILPTYPPPLGYSMVGGGYGAVGAGYGAAGFAQPLMYGPGATPAGMAMMPILLPDGRIAYVLQQPGLQQPGLQQHAPSPVTRHGRSGGGSSSGEKRNTDNNRNRGPGRYNPY 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03225 494 MobiDBLite consensus disorder prediction 36 86 - -
Vifa5g03225 494 MobiDBLite consensus disorder prediction 450 478 - -
Vifa5g03225 494 MobiDBLite consensus disorder prediction 1 96 - -
Vifa5g03225 494 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 289 367 IPR000504 GO:0003723
Vifa5g03225 494 SMART rrm1_1 290 363 IPR000504 GO:0003723
Vifa5g03225 494 SMART rrm1_1 196 273 IPR000504 GO:0003723
Vifa5g03225 494 SMART rrm1_1 119 189 IPR000504 GO:0003723
Vifa5g03225 494 Gene3D - 278 409 IPR012677 -
Vifa5g03225 494 Gene3D - 33 195 IPR012677 -
Vifa5g03225 494 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 195 277 IPR000504 GO:0003723
Vifa5g03225 494 SUPERFAMILY RNA-binding domain, RBD 115 279 IPR035979 GO:0003676
Vifa5g03225 494 CDD RRM_SF 120 189 - -
Vifa5g03225 494 MobiDBLite consensus disorder prediction 1 26 - -
Vifa5g03225 494 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 29 486 - -
Vifa5g03225 494 MobiDBLite consensus disorder prediction 450 494 - -
Vifa5g03225 494 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 118 193 IPR000504 GO:0003723
Vifa5g03225 494 Coils Coil 49 85 - -
Vifa5g03225 494 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 278 387 - -
Vifa5g03225 494 SUPERFAMILY RNA-binding domain, RBD 282 371 IPR035979 GO:0003676
Vifa5g03225 494 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 120 187 IPR000504 GO:0003723
Vifa5g03225 494 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 197 264 IPR000504 GO:0003723
Vifa5g03225 494 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 291 360 IPR000504 GO:0003723
Vifa5g03225 494 SMART rrm2_1 119 189 IPR003954 GO:0003676
Vifa5g03225 494 Gene3D - 196 276 IPR012677 -
Vifa5g03225 494 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 196 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03225 Vifa-Chr5 1069359253 1069363613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03225 120 390 Eukaryotic Initiation Factors Gene Family AT4G34110 22.654 6.48e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03225 K13161 - gmx:100798476 621.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03225 5 1069359253 1069363613 Vifa5g03225 5 1069359253 1069363613 ECH
Vifa5g03225 5 1069359253 1069363613 Vifa3g01436 3 374810694 374822525 PCT