Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03224 ATGCTGAGAAGCGGACGACAAATGCAAGATGTTGAACGGCGCAAAAGAGATTTGAGAAGGCAAAAACAAACCCTTGTTGGAAACCATTTGCAGTATAGTCGCTCATCTTCGTTTCTCACAGCATCCCGTGAAGCCGCTCCAAAATGGTTCACTAAGAGAACCAAGAAGGCCGGTATTGTTGGCAAATACGGCACCCGATATGGTGCTAGTTTGAGGAAGCAAATTAAGAAGATGGAAGTCGGTCAGCACAATAAATTTTTCTGCGACTTTTGTGGAAAGAGAAAGGCTGTTGGTATTTGGGGCTGCAAAGATTGTGGGAAGGTCAAGGCTGGTGGTGCTTACACTTTGAATACTGCCAGTGCTGTGACTGTTCGGAGTACCATCCGAAGGTTGAGGGAGCAGACTGAGAGTTAG 414 0.4638 MLRSGRQMQDVERRKRDLRRQKQTLVGNHLQYSRSSSFLTASREAAPKWFTKRTKKAGIVGKYGTRYGASLRKQIKKMEVGQHNKFFCDFCGKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03224 137 NCBIfam ribosomal protein eL43 51 136 IPR002674 GO:0003735|GO:0005840|GO:0006412
Vifa5g03224 137 Coils Coil 1 28 - -
Vifa5g03224 137 FunFam 60S ribosomal protein L37a 51 137 - -
Vifa5g03224 137 SUPERFAMILY Zn-binding ribosomal proteins 59 127 IPR011332 GO:0006412
Vifa5g03224 137 Gene3D - 50 137 IPR011331 GO:0003735|GO:0005840|GO:0006412
Vifa5g03224 137 Pfam Ribosomal L37ae protein family 53 133 IPR002674 GO:0003735|GO:0005840|GO:0006412
Vifa5g03224 137 PANTHER ZGC:171772 41 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03224 Vifa-Chr5 1069349887 1069351603 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03224 50 137 Cytoplasmic Ribosomal Protein Gene Family AT3G10950 88.043 8.22e-54 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03224 K02921 - csin:114301577 170.629