Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03214 ATGGAGAGGTTAGAGTTGAAAGAGGTTCAGAAACTCGAAGGTCACACCGATAGGGTTTGGAGCTTGGATTGGAATCCGGCCACCGGTCATGCCGGTGTTCCGCTCGTCTTCGCTTCTTGCAGCGGCGATAAAACCGTTCGAATCTGGGAACAGAACCTCTCCAATAGCCTCTTCTCATGCAAGGCGGTTTTGGAAGAAACACATACTCGAACTGTTCGATCTTGTGCTTGGTCACCTTCTGGGAAATTGTTAGCTACTGCAAGTTTTGATGCCACCACTGCTATATGGGAAAATGTTGGGGGTGATTTTGAGTGTGTCTCTACTTTGGAGGGACATGAAAACGAAGTAAAGAGTGTATCTTGGAATGCATCTGGAACTTTGCTTGCAACTTGCAGTAGAGATAAGTCCGTTTGGATATGGGAAGTGCAGCCAGGCAATGAGTTTGAGTGTGTCTCAGTGCTGCAAGGACATACTCAGGATGTGAAAATGGTGAGGTGGCACCCAACAGAGGATATCTTATTTTCATGTAGCTATGATAATAATATTAAGGTCTGGGCAGATGAAGGTGATAGTGACGATTGGCAGTGTGTTCAAACCCTTGGAGAACCCAACAATGGTCATACATCTACTGTTTGGGCCCTCTCCTTCAATGCTAGTGGAGACAAAATGGTTACCTGTAGTGATGATCTTTCCCTGAAGGTATGGGAAACAGACAACGTAGGGATGCAATCTGGTGGTGGATTTGCTCCTTGGAGACATCGTTGCACTCTTACAGGATATCATGAACGGACAATTTTCTCAGTTCATTGGTCAAGGGGAGGTATCTTTGCTAGTGGAGCTGCTGATAACGCCATAAGACTTTTTGTGGATAACAATGAAAGCCAGGTTGACGGTCCTTTGTACAAGTTGCTATTGAAGAAGGAGAAGGCACATGACATGGATATAAATTATGTGCAGTGGAGCCCTGGGGAGAAGCCGCTGCTAGCCTCAGCAAGCGATGACGGGACAATCAAGGTGTGGGATCTGGGATCATAG 1035 0.4628 MERLELKEVQKLEGHTDRVWSLDWNPATGHAGVPLVFASCSGDKTVRIWEQNLSNSLFSCKAVLEETHTRTVRSCAWSPSGKLLATASFDATTAIWENVGGDFECVSTLEGHENEVKSVSWNASGTLLATCSRDKSVWIWEVQPGNEFECVSVLQGHTQDVKMVRWHPTEDILFSCSYDNNIKVWADEGDSDDWQCVQTLGEPNNGHTSTVWALSFNASGDKMVTCSDDLSLKVWETDNVGMQSGGGFAPWRHRCTLTGYHERTIFSVHWSRGGIFASGAADNAIRLFVDNNESQVDGPLYKLLLKKEKAHDMDINYVQWSPGEKPLLASASDDGTIKVWDLGS 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03214 344 Hamap Probable cytosolic iron-sulfur protein assembly protein CIAO1 [CIAO1]. 4 344 IPR028608 GO:0016226|GO:0097361
Vifa5g03214 344 ProSitePatterns Trp-Asp (WD) repeats signature. 223 237 IPR019775 -
Vifa5g03214 344 ProSitePatterns Trp-Asp (WD) repeats signature. 128 142 IPR019775 -
Vifa5g03214 344 ProSiteProfiles Trp-Asp (WD) repeats profile. 109 150 IPR001680 GO:0005515
Vifa5g03214 344 ProSiteProfiles Trp-Asp (WD) repeats profile. 154 185 IPR001680 GO:0005515
Vifa5g03214 344 ProSitePatterns Trp-Asp (WD) repeats signature. 328 342 IPR019775 -
Vifa5g03214 344 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 308 344 - -
Vifa5g03214 344 CDD WD40 8 341 - -
Vifa5g03214 344 SUPERFAMILY WD40 repeat-like 4 341 IPR036322 GO:0005515
Vifa5g03214 344 SMART WD40_4 5 50 IPR001680 GO:0005515
Vifa5g03214 344 SMART WD40_4 252 289 IPR001680 GO:0005515
Vifa5g03214 344 SMART WD40_4 147 186 IPR001680 GO:0005515
Vifa5g03214 344 SMART WD40_4 57 97 IPR001680 GO:0005515
Vifa5g03214 344 SMART WD40_4 102 141 IPR001680 GO:0005515
Vifa5g03214 344 SMART WD40_4 301 341 IPR001680 GO:0005515
Vifa5g03214 344 SMART WD40_4 193 236 IPR001680 GO:0005515
Vifa5g03214 344 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 109 143 - -
Vifa5g03214 344 PANTHER WD40 PROTEIN CIAO1 6 342 IPR028608 GO:0016226|GO:0097361
Vifa5g03214 344 Gene3D - 35 344 IPR015943 GO:0005515
Vifa5g03214 344 Pfam WD domain, G-beta repeat 8 49 IPR001680 GO:0005515
Vifa5g03214 344 Pfam WD domain, G-beta repeat 194 235 IPR001680 GO:0005515
Vifa5g03214 344 Pfam WD domain, G-beta repeat 149 185 IPR001680 GO:0005515
Vifa5g03214 344 Pfam WD domain, G-beta repeat 60 96 IPR001680 GO:0005515
Vifa5g03214 344 Pfam WD domain, G-beta repeat 104 140 IPR001680 GO:0005515
Vifa5g03214 344 Pfam WD domain, G-beta repeat 309 341 IPR001680 GO:0005515
Vifa5g03214 344 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 204 239 - -
Vifa5g03214 344 ProSiteProfiles Trp-Asp (WD) repeats profile. 65 97 IPR001680 GO:0005515
Vifa5g03214 344 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 12 50 - -
Vifa5g03214 344 ProSiteProfiles Trp-Asp (WD) repeats profile. 12 59 IPR001680 GO:0005515
Vifa5g03214 344 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 154 185 - -
Vifa5g03214 344 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 65 97 - -
Vifa5g03214 344 PRINTS G protein beta WD-40 repeat signature 37 51 IPR020472 -
Vifa5g03214 344 PRINTS G protein beta WD-40 repeat signature 328 342 IPR020472 -
Vifa5g03214 344 PRINTS G protein beta WD-40 repeat signature 128 142 IPR020472 -
Vifa5g03214 344 FunFam Probable cytosolic iron-sulfur protein assembly protein CIAO1 4 344 - -
Vifa5g03214 344 ProSiteProfiles Trp-Asp (WD) repeats profile. 308 344 IPR001680 GO:0005515
Vifa5g03214 344 ProSiteProfiles Trp-Asp (WD) repeats profile. 204 239 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03214 Vifa-Chr5 1066436465 1066441843 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03214 80 344 U-box Gene Family AT2G33340 26.692 2.49e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03214 K24730 - gmx:100778826 660.988