Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03211 ATGATGGTAAGGGAGGGAGAGATGAATTGGCAACAAGGGGAGGTTGAATCGTTGCAGCGGGTGGAAGAAGAAGCGATTAGAAATGATGTTAATAATATCATGTCTTCGTCGCTTGGAAGACAGTCATCGTCGATATATTCACTCACCTTGGATGAGTTCCAGCATAGTTTATGCGAGAGTGGCAAGAATTTCGGGTCCATGAATATGGATGAGTTTCTGAGTAGTATATGGAATGCAGAAGAGAATCAACAACAAGCTGCTTCTAACAATAATAACAACTTGTCTATGATTCAGAAAGGGATTAGTAAACAGGCGAGTCTTCCTCGCCAGAATTCGTTGTCGATTCCTGCACCTCTCTGCAGGAAGACTGTTGAACAGGTTTGGTCCGAGATACACAGAGAACAACAGCAACAGCAAAACCTTCATCACAACAATGTTACTCATAATACTGAGTCTACCCCTCGACAACCGACTTTTGGAGAGATGACATTGGAGGATTTCTTGGTGAAAGCAGGGGTGGTTAGGGAACAACATACTGCTATGCAGGTTCCAATAGCACCTCCTGCAGTAGTATCATCTCACCGGCCGCAGCAGCATTACACTGCGGTGTATCCGAGTAACACCGCAACAATGGCTCAGGCTGCTCCTTTTTCTATTGGTGGAGGCGGTGGGAATGTGGTTGTACCAACTTACCAAGCGGTGGCTCAGGGTGGTGGTGCAATCGGAGAGCCTTCGGGTTCAGGGTTTGCTGCGAGTGGTAAAAGGGATAATATCGGTACTGGATATCCAGCACCACCTGCCGTTTGTTACGGAGGGAGAGGAGTAGGCGGTTATGGAGTGGCAGTGGCGCAAACTATGGGAATGGGCGGACCAGTTAGTCCGGTTTCATCGGACGGGATTGGTAACGAAAACTCGGGTGGTCAATTTGGACTTGATATGAGTGGTTTAAGAGGAAGAAAGAGATTGGGTGATGGTCCTGTTGAAAGGGTAGTGGAGAGAAGGCAGAGGAGGATGATTAAGAATAGAGAATCAGCAGCAAGATCTAGAGCCAGAAAACAGGCATACACAGTTGAATTAGAAGCAGAACTGAACCAGTTAAGAGAAGAGAATTCTCAACTGAAACAAGCACTGGCCGAACTCGAGACGAGAAGAAGACAGCAGTGTTTAGAGGAAACAAACGTGACAGTTCAAACCAAGGCTCAGAAAGCAAGAGAGAAACTGAGAGGCTTAAGAAGGAACACAAGTTGTCATCTCTGA 1257 0.4654 MMVREGEMNWQQGEVESLQRVEEEAIRNDVNNIMSSSLGRQSSSIYSLTLDEFQHSLCESGKNFGSMNMDEFLSSIWNAEENQQQAASNNNNNLSMIQKGISKQASLPRQNSLSIPAPLCRKTVEQVWSEIHREQQQQQNLHHNNVTHNTESTPRQPTFGEMTLEDFLVKAGVVREQHTAMQVPIAPPAVVSSHRPQQHYTAVYPSNTATMAQAAPFSIGGGGGNVVVPTYQAVAQGGGAIGEPSGSGFAASGKRDNIGTGYPAPPAVCYGGRGVGGYGVAVAQTMGMGGPVSPVSSDGIGNENSGGQFGLDMSGLRGRKRLGDGPVERVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLREENSQLKQALAELETRRRQQCLEETNVTVQTKAQKAREKLRGLRRNTSCHL 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03211 418 Gene3D - 331 386 - -
Vifa5g03211 418 MobiDBLite consensus disorder prediction 138 158 - -
Vifa5g03211 418 FunFam protein ABSCISIC ACID-INSENSITIVE 5 isoform X1 331 387 - -
Vifa5g03211 418 Coils Coil 349 390 - -
Vifa5g03211 418 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 336 351 IPR004827 GO:0003700|GO:0006355
Vifa5g03211 418 Coils Coil 393 413 - -
Vifa5g03211 418 SMART brlzneu 328 394 IPR004827 GO:0003700|GO:0006355
Vifa5g03211 418 CDD bZIP_plant_BZIP46 338 387 - -
Vifa5g03211 418 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 331 381 IPR004827 GO:0003700|GO:0006355
Vifa5g03211 418 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 39 397 IPR043452 GO:0003700|GO:0045893
Vifa5g03211 418 Pfam bZIP transcription factor 333 383 IPR004827 GO:0003700|GO:0006355
Vifa5g03211 418 SUPERFAMILY Leucine zipper domain 333 382 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03211 Vifa-Chr5 1064196080 1064197664 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03211 1 388 bZIP Transcription Factor Family AT2G36270 48.519 9.59e-105 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vifa5g03211 bZIP_1 2.3e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03211 K14432 - gmx:100790948 435.647