Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03200 ATGACCAACTCTGCCACATTTCCTCAAGGGGATTTCACGGACATAGATGATGATCCACGTGATGATGAAATTCTTAGACCTCCATCTCTTCTATCTACAGCCAGAAATCTCCATCCATTTTCTCTTCTTGATCCTACACTTGGTAGAAATATATTTTATACTCATCTCGGTTCAATAAACCAGAGGCCATTTGTTACACATCCAAGAGAGGTAAGGGAGATTCCAATAGAGGTTAAGGATGGTAGTCAATCCACTCCTCAAGCTGGCCACACTCCAATCGTTAAAGATGTCACTGGAACTGTTCATGCCCAAGGTTCGGGTACACATGGGAGTGTCGTAATAATTAATGATGATGATGACGACGATACTCCACCTGCTCCGACTCATACTTTGCCTGACAGTAGTATAATACCTAGTGCTCCCAACTTTGATAACTTACCAGATAATGGCAATGACATAGAAGAAGCAATGATTTGTGCAGCCATTGAGTCATCCAAACAGAAGGCTGAGGAAAATTACAGCAATCACGAACTTGGCAGACAAGTTAACTTAAGTGAATCTGGGCCCAACGTAAGGCAAACATTTGTGGAGGATCCTGAGCTTGCCCATGTAGTTTCATTGTCCCTGAAGACAGCAGAACAAGAAAAAGCACGGCGCGTACAAGAAGCGATAAGCGAGGACCTTGGACAAATAGAGTACATTTTGACAGACAAAACAGACACCTTGACTGAAAATAAGATGATATTCAGAAGATGTTGTATTAATGGAATTTTCTATGGAAATGAGAATGGAGATGCATTGAAAGATGTAGAGCTCCTTAATGCGGTTTCCAGTGGTTCTCCTGATGCTGTACTATTTCTTACATGGCAATATCCGCATATGATTTTCATCAATAAAAGTGGAAACATTCTTGAAGCCAAGTTCCACACTACTATACTTCAGTATGAAGTCCTGGAGATCTTAGAGTTCACTTCTGATAGGAAAAGAATGTCAGTAGTGTTGAAAGATTGCCAAAATGGAAAGATCCTTCTCCTGTCAAAGGGAGCAGATGAGGCTATTCTTCCATATGCTCGTGCTGGGCAGCAAACTCGTCACTTCATTAAAGCTGTGGAACAATATGCTCACTTGGGATTACGTACACTATGTTTGGTTTGGCGCGAGTTAAAGAAAGATGAATATCAAGATCGGTCTTCGATGTTTAAAGAAGCTAGTAGCACTTTGGTTGATAGGGAGTGGAGAGTAGCTGAGATCGCTTACAGGATGGAGTTCCTGAAACAATAG 1281 0.4145 MTNSATFPQGDFTDIDDDPRDDEILRPPSLLSTARNLHPFSLLDPTLGRNIFYTHLGSINQRPFVTHPREVREIPIEVKDGSQSTPQAGHTPIVKDVTGTVHAQGSGTHGSVVIINDDDDDDTPPAPTHTLPDSSIIPSAPNFDNLPDNGNDIEEAMICAAIESSKQKAEENYSNHELGRQVNLSESGPNVRQTFVEDPELAHVVSLSLKTAEQEKARRVQEAISEDLGQIEYILTDKTDTLTENKMIFRRCCINGIFYGNENGDALKDVELLNAVSSGSPDAVLFLTWQYPHMIFINKSGNILEAKFHTTILQYEVLEILEFTSDRKRMSVVLKDCQNGKILLLSKGADEAILPYARAGQQTRHFIKAVEQYAHLGLRTLCLVWRELKKDEYQDRSSMFKEASSTLVDREWRVAEIAYRMEFLKQ 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03200 426 Pfam Cation transport ATPase (P-type) 314 355 - -
Vifa5g03200 426 MobiDBLite consensus disorder prediction 1 23 - -
Vifa5g03200 426 MobiDBLite consensus disorder prediction 118 141 - -
Vifa5g03200 426 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 241 395 IPR023299 GO:0000166
Vifa5g03200 426 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 216 262 - -
Vifa5g03200 426 Gene3D - 234 423 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03200 Vifa-Chr5 1060387023 1060388532 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03200 223 422 Primary Pumps ATPases AT5G44240 62.661 1.75e-91 297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03200 K01530 - gmx:100786505 325.094