Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03198 ATGGGTTCATTATCTGGTACTGGTGAAATAGTTGAAGTAGGAGAGGATCCAAGTGTAGGGATTTACCAGTCGAATTCTCAGTTTAAAGCATCTGAGAAAAATAAGAAGCCTTTGGTAGTGAATTTGGGATACAAGGATAATATATATGATGATATTAACAAGCTGTTTGAGTCAATTGCTCTTAAATCTTCTTCACCAAGGGATTTGAGTTTTTCACAAGATGGTACGAGTACGAGTACATTGAAACAGCCTATGACATTGGGTGTTCCTCGCTCGCCGCGAGTTGGAGCTTCTGAGGCTGTTAATTTGAAGCAGGCTTTGAGAGATCTTTGTATATCTAAGGCGTCAGAAGTGGCTGCCATGAAACGGTTATCGAAATCAACAGCTTCTCCCAGAGTTTCGGAGGTTCGGAGGATACAAACATTGTACACTTCAGTTGTGGATGAACCGGGTTATTCTGGGCCTTATGTTGCTGAGGGTAAAGTTGGGTTTCACTCGCAGCGTGTTGTACCTGTTCAACCAGAAAAACAAACCTTCGCATCTTCTCCGTCTACTTGTGTGTCAAATACTGGACAGAACGGCAGCACAATTAACAAGCCGCCACACCGTGCTCCTCGCACACTCAAAATGGTCATCAAGAACAAGAATGTGAGCAAGAAGAAAGTGAAGGAAGATTCAAATTCTGCATTATGTGATCCTGCATCAAATGAATTTAGTAAGTCTGTTCCTGCCACAGCTCGGCTGGTTTGTGAAAGATGTAGGTGTGCTTTGGAAAATACAATGGAAGATGTAATTATGGCCTTGGATTCTACTAGTCCTGGAACTGGAGTGAAATCGAGTAATCTGCACTCTGGTTTAAATAAACCAGGTTTGGCATCAACTAGTGGTAATATAAGCAAAGCAGTTGCCAAGGTGGAGAAGATTCAGAAGAGCACCAAGTTGAAAGAGCAGCATGATTTTTCACAGAGCTCGAAGAGTAGTCAAGGGGAGTACAGTAGTAGTACTAGTACCAGTGACGACAGCAACATGAGTGGCTCAAGTTGCGGCACTAGGCCTCACATGTCAAAGGATGTTAGATGGGAAGCCATTCGACACGCTCAAGTGCAGCAAGGAGTCTTGGGCTTGAAACATTTCAATCTTTTGAAGAAACTTGGTTGTGGAGACATTGGGACTGTATATCTTGCTGAACTAATTGGCACAAGTTGCTTGTTTGCTATTAAGGTCATGGACATTGAATTTTTGGCAAGAAGGAAGAAAATGCCCAGGGCTCAAACTGAAAGAGAAATCTTAAGGATGCTGGACCATCCATTTCTTCCCACATTGTATGTGCAATTCACATCAGATAATCTCTCATGTTTAGTCATGGAGTATTGTCCAGGTGGAGATCTTCACGTTCTACGGCAGAAGCAGCTTGGTAGATGTTTTTCGGAACTAGCAGCAAGGTTTTATGTTGCTGAAGTCCTCCTTGCTTTGGAGTACCTGCACATGCTTGGAGTTGTTTACCGTGATCTGAAACCTGAAAACATTCTTGTTCGAGAAGACGGCCATATTATGCTCACTGATTTTGATCTGTCATTGAGGTGTGCTGTTAGCCCAACACTTCTGAAGTCGTCTTCTGATGTTGACCCTGCAAAAGTTTCTGGTCTTACTGCACAATCAAGTTGCATTGAACCATTATGCATTGAACCATCTTGTCAAGTTTCATGCTTCAGCCCTAGATTCCTACCTGCTGCTGCAAAAGCAAGGAAATTAAAAGTTAATCATGTTGCCCATGTCAGATCACTGCCGCAGCTTGTGGCCGAGCCCATTGATGCCAGATCAAACTCATTTGTTGGTACACACGAATACTTGGCGCCTGAGATCATCAAAGAAGAGGGACACGGAGCTGCAGTTGACTGGTGGACATTTGGTGTTTTTCTTTATGAGCTTTTATATGGTAGAACACCATTTAAAGGTTATAACAATGAAGAAACATTAGCAAATGTGGTGTCGCAAAGTCTTAGATTCCCCGATGACCCACTTGTCAGTTTTGAAGCTAAGGATCTGATTAGAGGGTTGTTAGTTAAAGAGCCTGAAAACCGTTTGGGTTCAGAGAGAGGGGCTGCTGAGATTAAAAAACATCCCTTCTTTGAGGGTCTTAACTGGGCCTTAATACGTTGCGCTACCCCACCAGAACTTCCAGAGTTTTGTGATTTTGGAGTTTTTGACACGGCCTCTCAAGGCAAGGGTGCTAAGTATTTAGAGTATAATGTAGGAGAGCACGTGGAGTTCGAGCTGTTTTAA 2283 0.4297 MGSLSGTGEIVEVGEDPSVGIYQSNSQFKASEKNKKPLVVNLGYKDNIYDDINKLFESIALKSSSPRDLSFSQDGTSTSTLKQPMTLGVPRSPRVGASEAVNLKQALRDLCISKASEVAAMKRLSKSTASPRVSEVRRIQTLYTSVVDEPGYSGPYVAEGKVGFHSQRVVPVQPEKQTFASSPSTCVSNTGQNGSTINKPPHRAPRTLKMVIKNKNVSKKKVKEDSNSALCDPASNEFSKSVPATARLVCERCRCALENTMEDVIMALDSTSPGTGVKSSNLHSGLNKPGLASTSGNISKAVAKVEKIQKSTKLKEQHDFSQSSKSSQGEYSSSTSTSDDSNMSGSSCGTRPHMSKDVRWEAIRHAQVQQGVLGLKHFNLLKKLGCGDIGTVYLAELIGTSCLFAIKVMDIEFLARRKKMPRAQTEREILRMLDHPFLPTLYVQFTSDNLSCLVMEYCPGGDLHVLRQKQLGRCFSELAARFYVAEVLLALEYLHMLGVVYRDLKPENILVREDGHIMLTDFDLSLRCAVSPTLLKSSSDVDPAKVSGLTAQSSCIEPLCIEPSCQVSCFSPRFLPAAAKARKLKVNHVAHVRSLPQLVAEPIDARSNSFVGTHEYLAPEIIKEEGHGAAVDWWTFGVFLYELLYGRTPFKGYNNEETLANVVSQSLRFPDDPLVSFEAKDLIRGLLVKEPENRLGSERGAAEIKKHPFFEGLNWALIRCATPPELPEFCDFGVFDTASQGKGAKYLEYNVGEHVEFELF 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03198 760 ProSitePatterns Serine/Threonine protein kinases active-site signature. 499 511 IPR008271 GO:0004672|GO:0006468
Vifa5g03198 760 FunFam serine/threonine-protein kinase D6PK-like 462 529 - -
Vifa5g03198 760 ProSiteProfiles Protein kinase domain profile. 378 710 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g03198 760 SMART serkin_6 378 710 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g03198 760 MobiDBLite consensus disorder prediction 273 295 - -
Vifa5g03198 760 Pfam Protein kinase domain 379 528 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g03198 760 Pfam Protein kinase domain 607 710 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g03198 760 MobiDBLite consensus disorder prediction 321 351 - -
Vifa5g03198 760 MobiDBLite consensus disorder prediction 313 352 - -
Vifa5g03198 760 Gene3D Phosphorylase Kinase; domain 1 376 457 - -
Vifa5g03198 760 CDD STKc_phototropin_like 376 728 - -
Vifa5g03198 760 MobiDBLite consensus disorder prediction 66 93 - -
Vifa5g03198 760 PANTHER FLIPPASE KINASE 1-RELATED 218 729 - -
Vifa5g03198 760 FunFam Serine/threonine-protein kinase D6PK-like 376 461 - -
Vifa5g03198 760 FunFam serine/threonine-protein kinase D6PK-like 605 728 - -
Vifa5g03198 760 Gene3D Transferase(Phosphotransferase) domain 1 458 526 - -
Vifa5g03198 760 MobiDBLite consensus disorder prediction 176 200 - -
Vifa5g03198 760 MobiDBLite consensus disorder prediction 66 86 - -
Vifa5g03198 760 Gene3D Transferase(Phosphotransferase) domain 1 604 728 - -
Vifa5g03198 760 SUPERFAMILY Protein kinase-like (PK-like) 353 729 IPR011009 -
Vifa5g03198 760 MobiDBLite consensus disorder prediction 176 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03198 Vifa-Chr5 1060353009 1060356089 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03198 247 760 AGC Kinase Gene Family AT3G52890 66.245 0.0 732
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vifa5g03198 Pkinase 5e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03198 - K08286 psat:127125671 1257.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03198 5 1060353009 1060356089 Vifa5g03198 5 1060353009 1060356089 ECH