Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03181 ATGCCTCAAAAGTACTTACACCAACTACTAAAGGAAGAACAAGAACCATTCCTTCTCAAAAACTACATTTCCGATAGACGCAACCAATTGAAAATCACTACCTTCAATAAAATTCAAAACACTAACTCAAATTTCAATTTCAACATAAATCTCTGTAAAAACTCTTCTTGTTTTTTCTCATTCCCCGGAACACCAGACTTCAGAAAATCGCCCCTGTTCGAATTAACATCCCCGGTTAAAAGCCCCTGCAAATCTTCCCGAACTGCAGCTCTTCTTCTAGAAGCTGCTCTCAGGATCCATAAGCATTCATCATCTTCCAATCACAAAACTAAAACCAAAGGTTTCGGTCTATTTGGATCTTTATTCAAGAGAATCAAGCAAAGAAACCAGAACCGGAAGCGTGAAATAAATAACGAAAATGTTTCTGTCAAGGATATATTGAATAGTAAAAAATTCGATTCTCACCGGGTAAACAAAACTATACCATTCCAAACGGAAACTTCTTGTAGCGGTTACTCAGAAAGGATCATTCACGAAGCTTGTGCTTGTTATCATTCTACTTTCTCTGAGAGTCCTTTCCGTTTTGTGCTTCAAACGAGTTCTTCCTCCGGCAGCCACACGCCGGAGTTAGCGTCGCCGAGTCATCGCATAACAGAGGACAAAGGTAGTAATGGAGCAGTTCAGAGCATGGATCAATTTCAGACCGGAGAAGAAGAGGAGGAAGATAAGGAACAGTGTAGTCCAGTCTGTGTTTTAGACCCACCATTTGAGGACGATGAGGAAGGACATGTAAACGATGACGATGATGATGATGATGGTGGTGGTTTTGAATTGGAGAGCAGCTATGCCATTGTACAGAGAGCAAGGCAGCAGATATTGTACAAGCTTCGCAGATTTGAGAAACTCGCAGGATTGGATCCGTTAGAACTCGAGAAGAGAATGCTGGATGACGAAGAGGATGTGGATGAATCATATATGGAAGAGGTTGATGTTGAAGATGAGGAAAGTGAAGTATCATGTAAAGAAAATGGCTTCAAAGAGCTTGTTTTTGAAGCTGTCTATCTGTCAATGGTCCATGACAGACAGCAAATGCCACAAGAGTTTAAGAAACTAATTCATGATCTCATTGTGGAAGAAGAGAGAGATTTTAACTCTTTAGAAGATAGGGACATGGTGATAACTAAGATATGCAAGAGGTTGGAATCTTGGAAAGAAGTGGAGTCAAACACAATTGATATGATGATAGAAGAGGATTTCTCTATAGAGGATGGAGGGTGGAAGAAAAATGTTGAGCAGATAAGGAATATGGCTGGTGAGCTTGAGTTTGATATCTTTAGCATTTTGGTGGAGGAATTTTCAGAGGAATTAGTGTGTTAG 1377 0.4009 MPQKYLHQLLKEEQEPFLLKNYISDRRNQLKITTFNKIQNTNSNFNFNINLCKNSSCFFSFPGTPDFRKSPLFELTSPVKSPCKSSRTAALLLEAALRIHKHSSSSNHKTKTKGFGLFGSLFKRIKQRNQNRKREINNENVSVKDILNSKKFDSHRVNKTIPFQTETSCSGYSERIIHEACACYHSTFSESPFRFVLQTSSSSGSHTPELASPSHRITEDKGSNGAVQSMDQFQTGEEEEEDKEQCSPVCVLDPPFEDDEEGHVNDDDDDDDGGGFELESSYAIVQRARQQILYKLRRFEKLAGLDPLELEKRMLDDEEDVDESYMEEVDVEDEESEVSCKENGFKELVFEAVYLSMVHDRQQMPQEFKKLIHDLIVEEERDFNSLEDRDMVITKICKRLESWKEVESNTIDMMIEEDFSIEDGGWKKNVEQIRNMAGELEFDIFSILVEEFSEELVC 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03181 458 MobiDBLite consensus disorder prediction 199 277 - -
Vifa5g03181 458 MobiDBLite consensus disorder prediction 259 276 - -
Vifa5g03181 458 PANTHER OS04G0572500 PROTEIN 3 456 - -
Vifa5g03181 458 MobiDBLite consensus disorder prediction 199 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03181 Vifa-Chr5 1055152365 1055155187 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03181 3 161 TRM (TON1 Recruiting Motif) Superfamily AT5G03670 40.449 8.68e-24 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03181 - - cam:101499859 563.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03181 5 1055152365 1055155187 Vifa5g03181 5 1055152365 1055155187 ECH
Vifa5g03181 5 1055152365 1055155187 Vifa3g01036 3 251244384 251247202 PCT