Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03178 ATGGAAATGGAAGACCATCATCATCACCATCATCATCATGAACATCATCAACATAACTATGGTAGTAGTACTAGCAATACTATAACTGATCTCACACAACTCATCAACATTGGACAAAGATCAACAACAGCCACCACTCACTTTCCCACGGCGGAGCTCTTCCCTTCCGGCAACCACCCGAATCTGGCAGTAACGGCTACACAACAACAATATGAGATGATGATGTTTGGTCGTCAAGTAGCCGATATATTGCCTCGGAGTCTTCATGACTTTGTTTCAACAGATTCTGCTACTGCGGTTGCTACTACCACTACAACGAGTGCTTCAACTCCTTCTCTTAGTGGTAATTTAGAGGCTGAAACTACTGCTTGCATTGGAGGAGGAGGAGGAGGAAGTATCGTCGATGCCTCCACCGGTAGATGGCCGAGGCAAGAGACTCTTACTCTTCTTGAAATCAGATCTCGTCTTGATCCTCAATTCAAAGAAGCTACTCAAAAGGGCCCTCTTTGGGATCAACTTTCTAGGATAATGTGTGAAGAGCATGGATATCAAAGAAGTGGAAAAAAATGCAGGGAGAAGTTTGAAAATCTATACAAATACTACAAGAAAACAAAAGAAGGAAAAGCAGGAAGACAAGATGGAAAACATTACAGGTTCTTTCGTCAACTCGAAGCCTTATATGGCGAAAACAACAACCCTTCTTCATCTTCACTCCCACAAAACAATTTCGGAACCAACAACAATCCGGAAATGTTTCAATCTCACAACAAATATTGTGATAGTCTCAGCCTCACAAACTCCACTGAATTCGACACGTCTTCATCTGATAACGAGAATGACCATAGCATCGAGGGAGTCAAGGAAAACGAGGGCTCGATGGATAAGAGAAAAAAGAGGATGAGTGGAAGAAGCTTTTGGAAGGTAAAGATAAAAGACTTCATTGATTCACAGGTGAAGAAATTGGTGGAGAAGCAAGAGGAATGGTTGGAGAAGCTCACGAAAACACTGGAACAAAAGGAAAAGGAGAGAGTGTTGAGAGAAGAAGAATGGAGGAAACAAGAGAAAGAGAGGTTGGAAAAAGAGCATAATTTTTGGGCTAAAGAAAGAGCATGGATTGAAGCTAGAGATGCTGCTTTAATGGAAGCTTTGCAGAAACTAAAAGGAAACGACGAAACAATAATAAAAACTCAATCTTCTTCTCACGACGGACACAAAAAGAGAAAGGAAAACACAAGAGGTTGTTTCTACTTTGATAATAACAACAATGTTGAAAGGTCTTGTTTATATAACAACAATGGAGTTGGAGTTGGAGTAGGAGTTTCTTATTGTGATGATCAAAGGGAAGTACAAACAAACGACGGTTCGAATTCGAACAACGTTGTTGTTGCAGCTGAAAATTGTTTTCCATTTTTGATGGGGGAGGGAGGAAATTTGTGGGATAATTACAGCTTGAAGGTTAATAAACCTAATCAAAACCAGTGA 1482 0.4055 MEMEDHHHHHHHHEHHQHNYGSSTSNTITDLTQLINIGQRSTTATTHFPTAELFPSGNHPNLAVTATQQQYEMMMFGRQVADILPRSLHDFVSTDSATAVATTTTTSASTPSLSGNLEAETTACIGGGGGGSIVDASTGRWPRQETLTLLEIRSRLDPQFKEATQKGPLWDQLSRIMCEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGRQDGKHYRFFRQLEALYGENNNPSSSSLPQNNFGTNNNPEMFQSHNKYCDSLSLTNSTEFDTSSSDNENDHSIEGVKENEGSMDKRKKRMSGRSFWKVKIKDFIDSQVKKLVEKQEEWLEKLTKTLEQKEKERVLREEEWRKQEKERLEKEHNFWAKERAWIEARDAALMEALQKLKGNDETIIKTQSSSHDGHKKRKENTRGCFYFDNNNNVERSCLYNNNGVGVGVGVSYCDDQREVQTNDGSNSNNVVVAAENCFPFLMGEGGNLWDNYSLKVNKPNQNQ 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03178 493 MobiDBLite consensus disorder prediction 269 298 - -
Vifa5g03178 493 MobiDBLite consensus disorder prediction 1 26 - -
Vifa5g03178 493 FunFam trihelix transcription factor PTL-like 141 203 - -
Vifa5g03178 493 ProSiteProfiles Myb-like domain profile. 139 198 IPR001005 -
Vifa5g03178 493 Pfam Myb/SANT-like DNA-binding domain 140 226 IPR044822 -
Vifa5g03178 493 CDD GT1 140 205 - -
Vifa5g03178 493 MobiDBLite consensus disorder prediction 274 298 - -
Vifa5g03178 493 MobiDBLite consensus disorder prediction 230 254 - -
Vifa5g03178 493 Gene3D - 141 203 - -
Vifa5g03178 493 PANTHER FI21293P1 102 389 - -
Vifa5g03178 493 Coils Coil 322 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03178 Vifa-Chr5 1053225176 1053227338 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03178 404 488 Trihelix Transcription Factor Family AT5G03680 33.663 1.27e-06 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vifa5g03178 Myb_DNA-bind_4 6.4e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03178 - - psat:127125684 808.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03178 5 1053225176 1053227338 Vifa5g03178 5 1053225176 1053227338 ECH
Vifa5g03178 5 1053225176 1053227338 Vifa3g01033 3 246803987 246806897 PCT